BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48775.1

Length=2060
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg908894 jgi|Araly1|908894|Al_scaffold_0002_1975                    152    9e-36
  Ahg908896 jgi|Araly1|908896|Al_scaffold_0002_1977                   82.4    1e-14
  Ahg890967 jgi|Araly1|890967|Al_scaffold_0007_2953                   60.2    6e-08


> Ahg908894 jgi|Araly1|908894|Al_scaffold_0002_1975
Length=2781

 Score =  152 bits (82),  Expect = 9e-36
 Identities = 96/103 (93%), Gaps = 0/103 (0%)
 Strand=Plus/Minus

Query  1783  CTGTCACGTGTGGTTATAATGATTCGGCTCCCTGGACCAAACCAGCTAGCCTCCTTTGCC  1842
             ||||| ||||||||||| ||||||||||||||||||||||||||||| |  || ||||||
Sbjct  989   CTGTCTCGTGTGGTTATGATGATTCGGCTCCCTGGACCAAACCAGCTCGTGTCTTTTGCC  930

Query  1843  AAGGCATGTAACTGCTCCACTTTATCAACACCATCAAGCACAA  1885
             |||||||||||||||||||||||||| ||||||||||||||||
Sbjct  929   AAGGCATGTAACTGCTCCACTTTATCCACACCATCAAGCACAA  887


> Ahg908896 jgi|Araly1|908896|Al_scaffold_0002_1977
Length=3510

 Score = 82.4 bits (44),  Expect = 1e-14
 Identities = 103/130 (79%), Gaps = 10/130 (8%)
 Strand=Plus/Minus

Query  255   TGAAATCATTTCCGCTGAGGTCCAGTTTTTGTAG-GACCTGCAAAAGGCCAATGTC-ATC  312
             |||||||||||||||||||||||||||| | ||| ||| ||||  || |||||||| | |
Sbjct  2530  TGAAATCATTTCCGCTGAGGTCCAGTTTCTCTAGTGAC-TGCATTAGACCAATGTCGA-C  2473

Query  313   TGGGATGCTTTCT--ATGTTTAGGTTTATGAGATTTAACTCGGTTAACCA-GAGGAAATC  369
             ||||||  |||||  || |||| ||| || ||||| |||||    || || | ||||| |
Sbjct  2472  TGGGAT--TTTCTGGATATTTAAGTTGATTAGATTCAACTCTACCAAGCACG-GGAAAGC  2416

Query  370   TGAAAAGCTA  379
             ||| ||||||
Sbjct  2415  TGAGAAGCTA  2406


> Ahg890967 jgi|Araly1|890967|Al_scaffold_0007_2953
Length=2901

 Score = 60.2 bits (32),  Expect = 6e-08
 Identities = 44/50 (88%), Gaps = 0/50 (0%)
 Strand=Plus/Minus

Query  1495  AGAAGGGTAGAAACACGGGAGACTGGTTCTCCATTGAAAAGACATGCGAC  1544
             |||||||| |  || ||  |||||||||||||||||||||||||||||||
Sbjct  1097  AGAAGGGTTGTGACTCGCAAGACTGGTTCTCCATTGAAAAGACATGCGAC  1048



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 77475558330


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5