BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48800.1
Length=2088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949324 jgi|Araly1|949324|scaffold_801211.1 2987 0.0
> Ahg949324 jgi|Araly1|949324|scaffold_801211.1
Length=1883
Score = 2987 bits (1617), Expect = 0.0
Identities = 1800/1889 (95%), Gaps = 9/1889 (0%)
Strand=Plus/Plus
Query 97 tcttGAACATAATTCTGCTtcatggacaagcatcatcatcaacatcttttattacagcat 156
|||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1 TCTTGAACATAATTCTATTTCATGGAAAAGCATCATCATCAGCATCTTTTGTTACAGCAT 60
Query 157 catcaacatcttcaccatcatcaGAAGCTCTCTCTTGCCAAATCATCCAGACAAAGCTGT 216
||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 61 CATCAACATCTCCACCATCACCAGAAGCTCTCTCTTGCCAAATCTTCTAGACAAAGCTGT 120
Query 217 AGTGAATGGATCTTTCGAGATGTTCCAAGTGATATAACCATAGAAGTAAACGGTGGAAAC 276
|||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 121 AGTGAATGGATCTTTCGAGACGTTCCAAGTGATATAACCATAGAAGTTAATGGAGGAAAC 180
Query 277 TTTGCTCTGCATAAGTTCCCTTTAGTCTCTAGAAGTGGAAGAATCCGAAGAATAGTTGCA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGCTCTGCATAAGTTCCCTTTAGTCTCTAGAAGTGGAAGAATCCGAAGAATAGTTGCA 240
Query 337 GAACATAGAGATTCAGATATCTCCAAAGTGGAGCTTCTTAATCTCCCAGGAGGAGCAGAG 396
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 241 GAACATAGAGATTCAGATATCTCTAAAGTGGAGCTTCTTAATCTTCCAGGAGGAGCAGAA 300
Query 397 ACATTCGAACTAGCAGCAAAATTCTGCTATGGGATTAACTTCGAGATCACTTCTTCGAAC 456
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 ACATTTGAATTAGCAGCCAAATTCTGCTATGGGATTAACTTCGAGATCACTTCTGCGAAC 360
Query 457 GTTGCACAGCTCTTTTGTGTCTCTGATTACCTCGAGATGACGGAAGAGTACTCCAAAGAT 516
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GTTGCACAGCTCTTTTGCGTCTCTGATTACCTCGAGATGACGGAAGAGTATTCCAAAGAT 420
Query 517 AACTTGGCTTCAAGAACAGAGGAGTATCTTGAGAGCATCGTATGCAAGAATCTTGAGATG 576
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 AACTTGGCTTCAAGAACAGAGGAGTATCTTGAGAGCATTGTGTGCAAGAATCTTGAGATG 480
Query 577 TGTGTTCAAGTCTTGAAACAATCCGAGATTCTTCTCCCTCTTGCAGATGAACTGAATATC 636
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 481 TGTGTTCAAGTCTTGAAACAATCCGAGAATCTTCTCCCTCTTGCAGATGAACTCAATATC 540
Query 637 ATAGGTAGATGTATCGATGCCATTGCCTCGAAGGCTTGCGCTGAGCAGATCGCTTCAAGC 696
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 541 ATAGGTAGATGTATCGATGCCATTGCCTCGAAGGCTTGCGCTGAACAGATTGCTTCGAGC 600
Query 697 TTTTCGA-GGTTGGAGTATAGTAGCTCAGGGAGGCTTCATATGAGCAGACAAGTGAA-AA 754
|| || | |||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 601 TTCTC-ACGGTTAGAGTATAGTAGCTCAGGGAGGCTTCATATGAGCAGGCAAGTGAAGAA 659
Query 755 GCAGTGGTGATGGAGGAGATTGGTGGATCGAAGATCTTTCGGTTCTGAGGATTGATTTGT 814
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 660 -CAGTGGTGATGGAGGAGATTGGTGGATCGAAGATCTTTCGGTTCTTAGGATTGATTTGT 718
Query 815 ATCAGAGAGTTATGAATGCAATGAAGTGTCGTGGTGTACGTCCAGAAAGTATAGGAGCTT 874
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 719 ATCAGAGAGTTATGAATGCAATGAAGTGTCGTGGTGTGCGTCCAGAGAGTATAGGAGCTT 778
Query 875 CTTTGGTTAGTTACGCTGAGAGAGAGCTAACAAAGAGATCTGAACATGAACAAACCATTG 934
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 CTTTGGTTAGTTACGCCGAGAGAGAGCTGACAAAGAGATCTGAACATGAACAAACCATTG 838
Query 935 TTGAGACAATTGTTACGCTTTTGCCAGTCGAAAACCTCGTGGTTCCGATCAGTTTCCTAT 994
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 839 TTGAGACAATTGTTACGCTTTTACCTGTCGAAAACCTCGTGGTTCCGATCAGTTTCCTCT 898
Query 995 TCGGGTTACTGAGAAGAGCAGTGATTCTTGATACTTCAGTTTCCTGCAGGCTTGATCTTG 1054
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 TTGGGTTACTGAGAAGAGCAGTGATTCTTGATACTTCAGTTTCCTGCAGGCTTGATCTAG 958
Query 1055 AGAGGAGGTTAGGTTCTCAGCTCGATATGGCGACTCTTGACGATCTCTTGATCCCGTCTT 1114
|||| ||| | |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 959 AGAGAAGGATCGGTTCTCAGCTCGATATGGCGACTCTAGATGATCTCTTGATCCCGTCTT 1018
Query 1115 TTCGTCATGCAGGAGACACTTTGTTCGACATTGACACGGTTCACAGAATCTTAGTGAATT 1174
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1019 TTCGTCATGCAGGAGACACTTTGTTCGACATTGACACGGTTCATAGAATCTTGGTGAATT 1078
Query 1175 TCTCACAGCAAGGAGGAGATGATAGTGAGGATGAAGAGTCTGTGTTTGAATGCGATAGTC 1234
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCTCACAGCAAGGAGGAGATGACAGTGAGGATGAAGAGTCTGTGTTTGAATGCGATAGTC 1138
Query 1235 CACATTCGCCTTCACAAACCGCCATGTTTAAAGTTGCAAAGCTTGTAGACAGTTATCTTG 1294
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CACATTCGCCTTCACAAACTGCCATGTTTAAAGTTGCAAAGCTTGTAGACAGTTATCTTG 1198
Query 1295 CTGAGATAGCTCCCGATGCTAACCTTGACCTTTCTAAGTTCTTGCTTATCGCAGAAGCCT 1354
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTGAGATCGCTCCTGATGCTAACCTTGACCTTTCTAAGTTCTTGCTTATCGCAGAAGCCT 1258
Query 1355 TACCGCCTCATGCTCGCACCCTTCACGATGGTTTATACCGCGCCATTGATCTCTATCTTA 1414
|||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 1259 TACCGCCTCATGCTCGTACCCTTCACGATGGTTTATACCGTGCCACTGATCTCTACCTTA 1318
Query 1415 AGGCACATCAAGGGTTATCAGATTCAGACAAGAAGAAACTATCAAAACTTATTGACTTCC 1474
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1319 AAGCACATCAAGGGTTATCAGATTCAGACAAGAAGAAGCTGTCAAAACTTATTGACTTCC 1378
Query 1475 AGAAACTCTCACAAGAAGCTGGAGCACACGCTGCACAAAACGAGCGGCTTCCTCTGCAAT 1534
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1379 AGAAACTCTCACAAGAAGCTGGAGCACACGCTGCCCAAAACGAGCGGCTTCCTCTACAAT 1438
Query 1535 CCATAGTTCAAGTTCTCTACTTTGAGCAACTCAAGCTTCGAAGCTCCTTGTGCTCTTCTT 1594
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1439 CTATAGTTCAAGTTCTCTACTTTGAGCAACTGAAGCTTCGAAGCTCCTTGTGCTCTTCTT 1498
Query 1595 ACTCAGACGAAGAGCCAAAGCCAAAGCAGCAACAACAGCAGTCATGGAGAATCAATAGCG 1654
|||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 1499 ACTCGGACGAAGAGCCAAAGCCAAAGCAACAGCAACAACAGTCATGGAGAATCAATAGTG 1558
Query 1655 GAGCTCTCAGTGCAACAATGTCCCCCAAAGACAACTATGCGTCTCTGAGGAGAGAAAACC 1714
|||||||||| ||| ||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 1559 GAGCTCTCAGCGCAGCAATGTCGCCCAAAGATAACTACGCATCTCTGAGGAGAGAAAACC 1618
Query 1715 GAGAACTGAAGCTCGAGTTAGCTAGGTTGAGAATGAGACTCAACGACCTAGAGAAAGAAC 1774
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GGGAACTGAAGCTCGAGTTAGCTAGGTTGAGAATGAGACTCAACGACCTAGAGAAAGAAC 1678
Query 1775 ATATATGTATGAAGAGAGATATGCAGAGGTCTCATTCGCGCAAATTCATGAGCAGTTTCT 1834
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 ATATCTGTATGAAGAGAGATATGCAGAGGTCTCATTCGCGCAAATTCATGAGCAGTTTCT 1738
Query 1835 CAAAGAAAATGGGGAAACTTAGCTTCTTTGGGCATAGCTCTTCAAGAGGATCAAGCTCTC 1894
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CAAAGAAAATGGGGAAGCTTAGCTTCTTTGGGCATAGCTCTTCAAGAGGATCAAGCTCTC 1798
Query 1895 CATCAAAGCAGTCTTTCAGAACAGATTCAAAGGTACTGATGGAGAGAACTTGCGCAAGCA 1954
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1799 CGTCAAAGCAGTCTTTCAGAACAGATTCAAAGGT---GATGGAGAGAACTTGCGCAAGCA 1855
Query 1955 CAGATTAGCTCAGTGTT-TATCATTTTCT 1982
||||||||||||| ||| ||||||| |||
Sbjct 1856 CAGATTAGCTCAG-GTTATATCATTCTCT 1883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78542085190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5