BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48820.2
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916411 jgi|Araly1|916411|Al_scaffold_0008_1162 566 2e-160
Ahg887888 jgi|Araly1|887888|Al_scaffold_0516_1 333 2e-90
> Ahg916411 jgi|Araly1|916411|Al_scaffold_0008_1162
Length=672
Score = 566 bits (306), Expect = 2e-160
Identities = 380/413 (92%), Gaps = 15/413 (4%)
Strand=Plus/Plus
Query 63 ATGGGGAAATACATGAAGAAATCAAAGATAACTGGCGATATCAGCGTCATGGAAGTCTCT 122
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGGGGAAATACATGAAGAAATCCAAGATTACTGGCGATATCAGTGTCATGGAAGTCTCT 60
Query 123 AAAGCAACAGCTCCAAGTCCAGGTGTTCGAACCAGAGCCGCTAAAACCCTAGCCTTGAAG 182
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGGCAACAG---C---TCCAGGTGTTCGAACCAGAGCCGCTAAAACCCTAGCCTTGAAG 114
Query 183 CGGCTTAATTCCTCCGCCGCTGATTCAGCTCTACCTAACGACTCTTCTTGCTATCTTCAG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CGGCTTAATTCCTCCGCCGCTGATTCAGCTCTACCTAACGACTCTTCTTGCTATCTTCAG 174
Query 243 CTCCGTAGCCGCCGTCTCGAGAAACCCTCTTCGCTGATTGAACCGAAACAGCCGCCGAGA 302
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 175 CTCCGTAGCCGCCGTCTCGAGAAACCCTCGTCGCTGATTGAACCGAAACAGCCGCCGAGA 234
Query 303 GTTCACAGATCGGGAATTAAAGAGTCTGGTTCCAGGTCTCGCGTTGACTCGGTTAACTCG 362
| ||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 235 GCTCACAAATCGGGAATCAAAGAGTCTGGTTCAAGGTCTCGCGTTGACTCAGTTAACTCG 294
Query 363 GTT--C-C--T----GTAGCTCAGAGCTCTAATGAAGATGAATGTTTTGACAATTTCGTG 413
||| | | | ||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 295 GTTGACTCGGTTCCTGTAGCTCAGAGCTCTAATGGAGATGAATGTTTTGATAATTTCGTG 354
Query 414 AGTGTCCAAGTTTCTTGTGGTGAAAACAGTCTCGGTTTTGAATCAAGACACAG 466
|||| ||| ||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct 355 AGTGCCCAGGTTTCTTATGGAGAGAACAGTCTCGATTTTGAATCAAGACACAG 407
Score = 409 bits (221), Expect = 3e-113
Identities = 251/266 (94%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 520 GCACAAGGGAGAGCACGCCTTGTAACTTTGTTGAGGATATGGAGATCATGGTTACACCAG 579
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 407 GCACAAGAGAGAGCACGCCTTGTAACTTTGTTGAGGATCTGGAGATCATGGTTACACCAG 466
Query 580 GGTCTAGCACGAGGTCGATGTGCAGAGCAACCAAAGAGTACACAAGGGAACAAGATAACG 639
|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct 467 GGTCTAGCACAAGGTCGATGCGCAGAGCAACCAAAGAGTACACAAGGGACCAAGATAGCG 526
Query 640 TGATCCCGACCACTAGTGAAATGGAGGAGTTCTTTGCATATGCAGAGCAGCAGCAACAGA 699
||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||
Sbjct 527 TGATCCCGACCACTAGTGAGTTGGAGGAGTTTTTTGCCTATGCAGAGCAGCAACAACAGA 586
Query 700 GGCTATTCATGGAGAAGTACAACTTCGACATTGTGAATGATATCCCCCTCAGCGGACGTT 759
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 587 GGCTATTCATGGAGAAGTACAACTTCGACATTGTGAATGAAATCCCCCTCAGCGGACGAT 646
Query 760 ACGAATGGGTGCAAGTCAAACCATGA 785
|||||||||| |||||||| ||||||
Sbjct 647 ACGAATGGGTACAAGTCAATCCATGA 672
> Ahg887888 jgi|Araly1|887888|Al_scaffold_0516_1
Length=219
Score = 333 bits (180), Expect = 2e-90
Identities = 206/219 (94%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 567 ATGGTTACACCAGGGTCTAGCACGAGGTCGATGTGCAGAGCAACCAAAGAGTACACAAGG 626
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGTTACACCAGGGTCTAGCACAAGGTCGATGCGCAGAGCAACCAAAGAGTACACAAGG 60
Query 627 GAACAAGATAACGTGATCCCGACCACTAGTGAAATGGAGGAGTTCTTTGCATATGCAGAG 686
|| ||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 61 GACCAAGATAGCGTGATCCCGACCACTAGTGAGTTGGAGGAGTTTTTTGCCTATGCAGAG 120
Query 687 CAGCAGCAACAGAGGCTATTCATGGAGAAGTACAACTTCGACATTGTGAATGATATCCCC 746
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CAGCAACAACAGAGGCTATTCATGGAGAAGTACAACTTCGACATTGTGAATGAAATCCCC 180
Query 747 CTCAGCGGACGTTACGAATGGGTGCAAGTCAAACCATGA 785
||||||||||| ||||||||||| |||||||| ||||||
Sbjct 181 CTCAGCGGACGATACGAATGGGTACAAGTCAATCCATGA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5