BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48830.2
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494946 jgi|Araly1|494946|fgenesh2_kg.8__762__AT5G48830.1 2326 0.0
Ahg925876 jgi|Araly1|925876|scaffold_201437.1 150 3e-35
> Ahg494946 jgi|Araly1|494946|fgenesh2_kg.8__762__AT5G48830.1
Length=1778
Score = 2326 bits (1259), Expect = 0.0
Identities = 1622/1781 (91%), Gaps = 89/1781 (5%)
Strand=Plus/Plus
Query 115 TCCTTGTTGCTCTTCTCTTC-CATGCTAATTTGAGAGATTGGGCTTGAGGATCTG-TTTC 172
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||| || |
Sbjct 1 TCCTTGTTGCTCTTCTCTTCTC-TGCTAATTTGAGAGATTGGGCTTAAGGATCTGCTTCC 59
Query 173 CGAGATTACGAAATGCTTTAGTAGTGTGAGTTCTAAGG-TT-ATTTACCAATGGTTGGAC 230
|||||||| ||||||||||||| || ||||||||||| || |||||||||||||||||
Sbjct 60 CGAGATTAGGAAATGCTTTAGT--TGCGAGTTCTAAGGTTTCTTTTACCAATGGTTGGAC 117
Query 231 ATGTTGTTGTGTCTCCTTCATCGAGCGTTCAGCTCCGGATGCACAATGTTCACTCTAGTC 290
|||||||||||||||| |||| | |||||||||| ||||||||||||| | |
Sbjct 118 ATGTTGTTGTGTCTCCATCATTGTGCGTTCAGCTACGGATGCACAATG-------T--T- 167
Query 291 AAACAAGCTGCTTCTCCACAAATCCTCGTGTAAAATTTTCCCAGAGGAGTTGCAAGATCG 350
| | ||||||||| ||||||||||| ||||||||||| | || | |||| |
Sbjct 168 ---C-A----CTTCTCCACGAATCCTCGTGTGAAATTTTCCCA-A--AG--G-AAGA-C- 211
Query 351 TATCAAGGAAAGCTTAC-AAAT--T-T-AATGTTTCTACTTCCTTGAATCTTGGATCGTC 405
| | || || || | |||| | | || | ||||||||||||||||||||||||
Sbjct 212 T-T-TTGG-GAG-TTGCAAAATCATATCAA-G-GGATACTTCCTTGAATCTTGGATCGTC 265
Query 406 T-TGTTCTCAG-GGAGATTCTACTTGTAAGTGTACTTGTTTTGCTTCTCTGGCGGATTTT 463
| | ||||| | ||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct 266 TAT-TTCTC-GTGGAGAGTCTACTTGTAAGTGTACTTGCTTGGCATCTCTTGCGGATTTT 323
Query 464 GATGGTGTTGCTGGTTCTGGTTGGGTTCCTATTGGTGACCAAGTTC-TCTTGACGGCTAG 522
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 324 GATGGTGTTGCTGGTTCTGGTTGGGTTCCTATTGGTGACCAAGTTCTTC-TGACGGCTAG 382
Query 523 TATATTTCTTACGTATATGGCTGGAGTGATTCCTGTTCAAAAAACCTCTACCTACTCTTC 582
|||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 383 TATATTTCTTACCTATATGGCTGGAGTGATTCCTGTTCAAAAAAACTCTACTTACTCTTC 442
Query 583 GGGAAAGAGTACGATC-GTGGAGGA-GATACCAGAAGTTGGAACTTCAAAATCTTCTGGT 640
| |||||| ||| | | |||||||| ||| ||||| |||||||||||| |||||||||||
Sbjct 443 GAGAAAGAATACTA-CTGTGGAGGAGGAT-CCAGATGTTGGAACTTCAGAATCTTCTGGT 500
Query 641 AGGGAGACAGATTTTGAGGGTGATTTGAAGTCTGTATGGGATGTGGTGAAAGTAAAGCTT 700
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 501 AGGGAGACAGATTTTGAGGGTGATTTGAAGTCTGTATGGGAAGTAGTGAAAGTAAAGCTT 560
Query 701 TTAGATTCTTTAGACGCCATCAAGCGTGAGAATACACTTGGAAGCAAAGTTCTCAAACCC 760
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 561 TTAGATTCTTTAGACGCCATCAAGCGTGAGAGTACACTTGGAAGCAAAGTTCTCAAACCC 620
Query 761 AAACCTCCCCAAGGGAAGCCCCCATTGAGTTTGTATGCGATATCTGAAGGGCCTCAGTTG 820
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 621 AAACCTCCCCAAGGGAAGCCCCCATTGAGTTTGTATGCGATATCTGAGGGGCCTCAGTTG 680
Query 821 TACTTGCTCTGGTCATGTTTTCAGAAACTTGAAGAAGAGACAAATAAGATCTCTGGCACA 880
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 681 TACTTGCTCTGGTCATGTTTTCAGAAACTTGAAGAAGAGACAAATAACATCTCTGACACA 740
Query 881 ATCAATTCAGATGAGTGGATGGGTAGTTTTACTCAAATTGTTC-GAGAAGCATATCAAGC 939
|||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||
Sbjct 741 ATCAATTCAGATGAGTGGATGGTTAGTTTTACTCAAATTGTTCGGAG-AGCTTATCAAGC 799
Query 940 AGCATGCACGGCTTGGCT-AAAAGAGGAACTGTATGTGGAAAACACTGATTCTGACAATA 998
|||||||||||||||||| ||||| |||||| | ||||| || || | |||
Sbjct 800 AGCATGCACGGCTTGGCTAAAAAG-GGAACTATCTGTGG-GAA-AC--A--CTG------ 846
Query 999 ATCTAGCCCGTGATTTGCAGGCGATAACTCCTTTGCTGATCAGAATGCTAAATGAAAAGG 1058
|| | | || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 847 AT-T----C------TG-AGGCGATTACTCCTTTGCTGATCAGAATGCTAAATGAAAAGG 894
Query 1059 ATGCTATATTTGACAAAATAAGAAAATCAGGCAAGGAGGATCTGTTTGCAGAATTTTTAT 1118
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ACGCTATTTTTGACAAAATAAGAAAATCAGGCAAGGAGGATCTGTTTGCAGAATTTTTAT 954
Query 1119 ATTTCCATAAATTTGGATCTCCCGGGAAAGCTTTCTGCTATGAC-TTGAGCTTCTTTCGC 1177
||||||||| |||||||||||||| ||||||||||||||| ||| || ||||||||||||
Sbjct 955 ATTTCCATAGATTTGGATCTCCCGCGAAAGCTTTCTGCTACGACGTT-AGCTTCTTTCGC 1013
Query 1178 ACTCACGGAGTTGCCATTTTGGAAGACTTCATGATAACATTGGCGGATGGGGTCGCTAGC 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ACTCACGGAGTTGCCATTTTGGAAGACTTCATGATAACATTGGCGGATGGGGTCGCTAGC 1073
Query 1238 ATCTATCTAGAGCTTATTTCTGTAGACAGCAAATTTTCAAATGAAATGAATAGTGGAGGA 1297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ATCTATCTAGAGCTCATTTCTGTAGACAGCAAATTTTCAAATGAAATGAATAGTGGAGGA 1133
Query 1298 TTAAGTATCTGTAGCCTTTCTAGTCGAGCACTCCAAAAACTACGTAACGAGGTAGCTCTA 1357
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTAGGTATTTGTAGCCTTTCTAGTCGAGCACTCCAAAAACTACGTAACGAGGTAGCTCTA 1193
Query 1358 TATCAGTGGTTGCATCAGAATCTGGAAGCAGTTGTATCGATGTATGAAGATCGCTTTGAC 1417
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1194 TACCAGTGGTTGCATCAGAATATGGAAGCAGTTGTATCGATGTATGAGGATCGCTTTGAC 1253
Query 1418 CTCTACATTCTTCAAACCCAGGTTATCAACAACCTTGATGGTAGTGACGATACAGAAAGC 1477
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CTCTACATTCTTAAAACTCAGGTTATCAACAACCTTGATGGTAGTGACGATACAGAAAGC 1313
Query 1478 CTTAGTTGGTGGAGAAAGTTCACACTGGGAAAAACTAAAGCTGCCCCATCATCACCCTTG 1537
| ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1314 CGTAGCTGGTGGAGAAAGTTCAAACTGGGAAAAACTAAAGCTGCCTCATCATCACCCTTG 1373
Query 1538 CGATACTCCATAATCAGCGACTTTTCATTGCCCGTTAAACGAACCAAGGAGCTTAAAGCT 1597
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1374 CGATACTCCATAATCAGCGATTTTTCATTGCCTGTTAAACGAACCAAGGAGCTTAAAGCT 1433
Query 1598 CTATCGGGATGG---TACTACTTCAGTCTATTTCTGGAGTTATCAGACATCGGGATGCCA 1654
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1434 CTATCGGGATGGAGGTACTACTTCAGTCTGTTTCTGGAGTTATCAGACATCGGAATGCCA 1493
Query 1655 ATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTCACCTTG 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 ATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTCACCTTG 1553
Query 1715 ATCGGTAGATCAGTCGGACTCATCTTCACCGGCATTAGACAGTCTCTCCGCTGGAAGTGA 1774
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1554 ATAGGTAGATCAGTCGGACTCATCTTCACCGGCATTAGACAGTCTCTCCGTTGGAAGTGA 1613
Query 1775 AATCTCATATAACCGTGATGGTAAtttttttGCGTCGACCTCATTTTT-GGTGTTCTTTT 1833
|||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1614 AATCTCATATAACCTTGATGGTAATTTTTT-GCGTCGACCTCATTTTTTGGTGTTCTTTT 1672
Query 1834 CATTATTCTTGTTTGGTATGTGATAAATTGGTGAAATATGA 1874
||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1673 GATTATTCTTGTATGGTAAGTGATAAATTGGTGAAATATGA 1713
> Ahg925876 jgi|Araly1|925876|scaffold_201437.1
Length=1657
Score = 150 bits (81), Expect = 3e-35
Identities = 93/99 (94%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 1351 AGCTCTATATCAGTGGTTGCATCAGAATCTGGAAGCAGTTGTATCGATGTATGAAGATCG 1410
||||||||| |||||||||||||||||| ||||||||||||| | ||||||||| |||||
Sbjct 1514 AGCTCTATACCAGTGGTTGCATCAGAATATGGAAGCAGTTGTGTTGATGTATGATGATCG 1573
Query 1411 CTTTGACCTCTACATTCTTCAAACCCAGGTTATCAACAA 1449
|||||||||||||||||||||||| ||||||||||||||
Sbjct 1574 CTTTGACCTCTACATTCTTCAAACTCAGGTTATCAACAA 1612
Score = 89.8 bits (48), Expect = 7e-17
Identities = 52/54 (96%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1072 CAAAATAAGAAAATCAGGCAAGGAGGATCTGTTTGCAGAATTTTTATATTTCCA 1125
||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 359 CAAAATAAGAAAATCAGGCAAGGAGGATCGGTTTGCAGAATTCTTATATTTCCA 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70390772760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5