BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48840.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494947 jgi|Araly1|494947|fgenesh2_kg.8__763__AT5G48840.1 1555 0.0
> Ahg494947 jgi|Araly1|494947|fgenesh2_kg.8__763__AT5G48840.1
Length=1187
Score = 1555 bits (842), Expect = 0.0
Identities = 959/1016 (94%), Gaps = 6/1016 (1%)
Strand=Plus/Plus
Query 1 AAACATTCGTCGGAAGACAATCTCAATTTTCCGACAATGGAACCAGAAGTAATCAGAGAC 60
||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||| |||
Sbjct 1 AAACACTCGTCGGAAGACGATCTCAAATCTCCGACAATGGAACCAGAAGTAATCAGGGAC 60
Query 61 AAAGACTCTATGAGAAAATGGTCTCGAGCCATGAGATCACAAGGCAAGACCATTGGTTTA 120
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 AAAGACTCGATGAGAAAATGGTCTCGAGCCATGAGATTACAAGGCAAGACCATTGGTTTA 120
Query 121 GTACCAACAATGGGTTACCTCCACGAAGGTCACTTATCTCTCGTTCGTCAATCAC-TAGC 179
||||| |||||||||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 121 GTACCCACAATGGGTTACCTCCACGAAGGTCACTTATCTCTCGTCCGTCAATC-CTTAAC 179
Query 180 CCTCACTGACGTCACCGTCGTCTCAATCTACGTCAATCCAGGCCAATTCTCTCCCACTGA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 CCTCACTGACGTCACCGTCGTCTCAATCTACGTCAATCCAGGCCAATTCTCTTCCACTGA 239
Query 240 AGACCTCTCCACATACCCATCTGATTTCTCCGGCGATCTCACTAAGCTCGCGGCTCTTTC 299
||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 240 AGATCTCTCCACTTACCCATCTGATTTCTCCGGCGATCTCACCAAGCTCGCGGCTATTTC 299
Query 300 CGGTGGTAAAGTCGTCGTCTTTAACCCAAAAAACCTCTATGATTACGGCGGTGAGACGAA 359
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 300 CGGTGGTAAAGTCGTCGTCTTTAACCCCAAAAACCTCTACGATTACGGCGGTGAGACCAA 359
Query 360 GAAGATAAACGACGGTGGTGGTAATGGTGGGAGGGTAGTGAGTTGTGTGGAGGAAGGTGG 419
||||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||
Sbjct 360 GAAGATAAATGACGGTGGTGGTGGTGGTGGGAGGGTTGTGAGTTGTGTAGAGGAAGGTGG 419
Query 420 GTTAGGGCATGAGACTTGGATTAGGGTTGAGAGATTGGAGAAAGGTTTTTGTGGGAAGAG 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GTTAGGGCATGAGACTTGGATTAGGGTTGAGAGATTGGAGAAAGGTTTGTGTGGGAAGAG 479
Query 480 TAGGCCTGTGTTCTTTAGAGGTGTTGCTACTATTGTTACTAAGCTTTTTAATATTGTTGA 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TAGGCCTGTGTTCTTTAGAGGTGTTGCCACTATTGTTACTAAGCTTTTTAATATTGTTGA 539
Query 540 GCCTGATGTTGCTCTGTTTGGTAAGAAAG-ATTATCAACAATGGAGGATTATACAGAGAA 598
|||||||||| || |||||||||| |||| |||||||||||||| ||||||| |||||||
Sbjct 540 GCCTGATGTTACTGTGTTTGGTAA-AAAGGATTATCAACAATGGCGGATTATTCAGAGAA 598
Query 599 TGGTTCGAGATCTTAATTTTGGTATTGAGATTGTAGGATCAGATATAGCTAGAGAAAAAG 658
|||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 599 TGGTTCGAGATCTTGATTTTGGAATAGAGATTGTAGGATCAGATATAGCTAGAGAAAAAG 658
Query 659 ATGGACTTGCGATGAGTTCGAGAAATGTGCGTCTTTCAGATGAAGAAAGGCAAAGGGCTT 718
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 659 ATGGACTTGCAATGAGTTCTAGAAATGTGCGTCTTTCAGATGAAGAAAGGCAAAGGGCGT 718
Query 719 TGTCTATAAGTAGGTCACTGGCCATGGCTAAAGCTTCTGTTGCAGAAGGGAAAACCAATT 778
|||||||||||||||||||||||||||||||||||||||| | |||||| |||||| ||
Sbjct 719 TGTCTATAAGTAGGTCACTGGCCATGGCTAAAGCTTCTGTAACTGAAGGGCAAACCAGTT 778
Query 779 GTGCAGAGCTTAAGGATATGATCATTCAACAAGTTGTTGGATCTGCAGGACGAGTAGATT 838
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGCAGAGCTTAAGGGTATGATCATTCAACAAGTTGTTGGATCTGCAGGACGAGTAGATT 838
Query 839 ATGTCGAGATAGTTGACCAAGAAACTCTTGAAGGAGTAGAAGAGATAAAGAGTGGGGTAG 898
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 839 ATGTTGAGATTGTTGACCAAGAAACTCTGGAAGGAGTAGAAGAGATAAAGAGTGGAGTAG 898
Query 899 TGATTTGTGTTGCTGCTTGGTTTGGAACGGTCAGGCTCATAGACAACATTGAGATCAATG 958
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 899 TGATTTGTGTTGCTGCTTGGTTTGGAACGGTCAGGCTCATTGACAACATTGAGATCGATG 958
Query 959 TCTCTCTCTAGATCTCACTGTATGCATCAAACTTCATGAA-AAAACTTGGAAGCTT 1013
||||||| ||||||| | ||| ||||||||||||||| || |||||||||||||||
Sbjct 959 TCTCTCTTTAGATCTAAATGTCTGCATCAAACTTCAT-AACAAAACTTGGAAGCTT 1013
Score = 204 bits (110), Expect = 2e-51
Identities = 155/176 (88%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 1061 GCAAATCC-AAAAGATTGATGAGTATCATCGTAAACTAT--CAGCTTCACCATGTTTGTG 1117
||||| || | |||||||||||| |||| |||||||||| |||||||| ||||| ||
Sbjct 1014 GCAAA-CCGAGAAGATTGATGAGAATCAACGTAAACTATCACAGCTTCATTATGTTGGTA 1072
Query 1118 TGTACGTGATAGGATTGAAGCAGGAATGATATTTGCACATTCTCGTTGTCTCTGTTATAA 1177
|||| | || ||||| |||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1073 TGTAAGAGACAGGATGGAAGCAGGAATGATATTTGCACATTCTCATTGTATCTGTTATAA 1132
Query 1178 CCTCTTT-CATTGCAAACCTGAGTGTTTTGAGTTTTGAATTTTACACACAGTTTTG 1232
||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1133 CCTCTTTTCATTGCAAACCTGAGTGTTT-GAGTTTTGAAATTTACACACAGCTTTG 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5