BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48850.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494948 jgi|Araly1|494948|fgenesh2_kg.8__764__AT5G48850.1 1506 0.0
> Ahg494948 jgi|Araly1|494948|fgenesh2_kg.8__764__AT5G48850.1
Length=967
Score = 1506 bits (815), Expect = 0.0
Identities = 904/948 (95%), Gaps = 2/948 (0%)
Strand=Plus/Plus
Query 54 aaaaaagatggagagaagcttgaagaagacgaagaaCAATTATAACAACTCCATAAAGAG 113
|||||| ||||| |||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 21 AAAAAATATGGATAGAAGCTTGAAGAAGATGAAGAACAATTACAACAACTCGATAAAGAG 80
Query 114 CAATCTTATGAAAGATGATGAATTGTTTCATGTGATTCACAAAGTTCCCTGTGGAGACAC 173
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 81 CAATCTTATGAAAGATGATGAAATGTTTCATGTGATTCACAAAGTTCCTTGTGGAGATAC 140
Query 174 TCCTTATGTCAGAGCCAAACATGCTCAGTTGATAGAGAAGAACCCGGAGATGGCAATAGT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TCCTTATGTCAGAGCCAAACATGCTCAGTTGATAGAGAAGAACCCGGAGATGGCAATAGT 200
Query 234 GTGGTTTTGGAAAGCCATCAACACTGGAGACAGAGTAGACAGTGCCCTCAAGGACATGGC 293
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 201 GTGGTTTTGGAAAGCCATCAACACCGGAGACAGAGTAGACAGTGCTCTTAAGGACATGGC 260
Query 294 TGTTGTAATGAAACAACTTGACCGTTCTGAAGAAGCTATTGAAGCTATCAAATCTTTCCG 353
||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct 261 TGTTGTAATGAAACAACTTGACCGTTCCGAAGAAGCCATCGAAGCTATCAAATCCTTCCG 320
Query 354 TCCTCGTTGTTCCAAGAATTCCCAAGATTCCCTTGACAATGTCCTCATCGACTTATACAA 413
||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 321 TCCTCGTTGCTCCAAGAACTCCCAAGATTCTCTAGACAATGTCCTCATCGACTTATACAA 380
Query 414 GAAATGTGGGAGAATGGAGGAGCAAGTTGAGTTGTTGAAGAGGAAATTAAGGCAGATCTA 473
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 381 GAAATGCGGTAGAATGGAGGAGCAAGTTGAGTTGTTGAAGAGGAAGCTAAGGCAGATCTA 440
Query 474 TCAAGGAGAAGCTTTCAATGGTAAACCTACCAAAACCGCTCGCTCCCACGG-AAAAAAGT 532
|||||| || |||||||| |||||||| ||||||||||||||||| || || |||||| |
Sbjct 441 TCAAGGGGAGGCTTTCAACGGTAAACCCACCAAAACCGCTCGCTCTCATGGCAAAAAA-T 499
Query 533 TTCAAGTGACTGTTCAACAAGAAATCTCAAGATTACTGGGTAACTTGGGGTGGGCATATA 592
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 500 TTCAAGTGACCGTTCAACAAGAAATCTCAAGATTATTGGGTAACTTGGGGTGGGCATATA 559
Query 593 TGCAACAAGCCAAGTACTTATCGGCCGAAGCGGTATACAGAAAAGCCCAGATGGTTGAGC 652
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 560 TGCAACAAGCCAAGTACTTGTCGGCAGAGGCGGTATACAGAAAAGCCCAGATGGTTGAGC 619
Query 653 CAGATGCTAACAAATCGTGCAACCTTGCGATGTGCCTTATCAAACAAGGCAGGTTTGAGG 712
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CAGATGCAAACAAATCGTGCAACCTTGCGATGTGCCTTATCAAACAAGGCAGGTTTGAGG 679
Query 713 AGGGAAGATTGGTTCTTGACGATGTTCTCGAGTATAGGGTTTTGGGTGCGGATGATTGTA 772
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 680 AGGGAAGATTGGTTCTTGACGATGTTCTCGAGTCTAGGGTTTTGGGTGCGGATGATTGTA 739
Query 773 GAACAAGGCAACGGGCCGAAGAGCTTCTGAGTGAATTAGAGTCTTCGCTGCCACGGATGC 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GAACAAGGCAACGGGCCGAAGAGCTTCTGAGTGAATTAGAGTCTTCGCTGCCACGGATGC 799
Query 833 GAGATGCTGAGATGGAGGATGTCTTGGGAAATATCTTAGACGATGACTTTGTTCTTGGGC 892
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 800 GAGATGCTGAGATGGAGGATGTCTTGGGGAATATCTTAGACGATGATTTTGTTCTTGGGC 859
Query 893 TTGAAGAGATGACATCCACTAGTTTTAAATCTAAGAGACTCCCAATCTTCGAACAGATCT 952
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 860 TTGAACAGATGACATCCACTAGTTTTAAATCGAAGAGACTCCCAATCTTCGAACAGATCT 919
Query 953 CGTCTTTTAGAAATACATTAGTTTGCTAGTTAATTCATTCTGTGTTTT 1000
||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 920 CGTCTTTTAGAAATACATTAGTTTGCTAGTTTATTCATTTTGTGTTTT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5