BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48870.1
Length=520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949330 jgi|Araly1|949330|scaffold_801217.1 442 1e-123
> Ahg949330 jgi|Araly1|949330|scaffold_801217.1
Length=313
Score = 442 bits (239), Expect = 1e-123
Identities = 279/299 (93%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 37 TTCACTTGCCTCACTGTTCTTCGTCATGGCGAACAATCCTTCACAGCTTCTTCCTTCAGA 96
||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2 TTCACTTACCTCACTCTTCTTCGTCATGGCGAACAATCCTTCGCAGCTTCTTCCATCAGA 61
Query 97 GCTAATCGATAGGTGTATAGGGTCTAAGATTTGGGTGATAATGAAAGGAGATAAGGAGCT 156
||||||||||||||| ||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 62 GCTAATCGATAGGTGCATAGGATCGAAGATATGGGTGATTATGAAAGGAGATAAGGAGCT 121
Query 157 CGTTGGTATTCTCAAAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTCACCGA 216
||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 122 TGTTGGTATTCTTAAAGGCTTCGATGTTTATGTTAACATGGTTCTTGAAGATGTCACCGA 181
Query 217 ATATGAGATTACGGCAGAAGGAAGACGGGTCACAAAGCTTGATCAGATTCTACTCAATGG 276
|||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 182 ATATGAGATTACAGCAGAAGGAAGACGGGTTACAAAGCTTGATCAAATTCTGCTCAATGG 241
Query 277 CAACAACATCGCCATTCTGGTGCCAGGTGGGTCTCCCGAAGATGGAGAATGAGATTTGC 335
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 242 CAACAACATCGCCATTCTCGTGCCAGGTGGGTCTCCCGAAGATGCAGAATGAGGTTTGC 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18925172144
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5