BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48880.2
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331293 jgi|Araly1|331293|fgenesh1_pm.C_scaffold_8000636 2261 0.0
Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1 416 3e-115
> Ahg331293 jgi|Araly1|331293|fgenesh1_pm.C_scaffold_8000636
Length=1374
Score = 2261 bits (1224), Expect = 0.0
Identities = 1324/1374 (96%), Gaps = 0/1374 (0%)
Strand=Plus/Plus
Query 184 ATGGAGAGAGCTATGGAAAGACAAAAGATATTGCTTCGTCATCTCAATCCAGTTTCTTCT 243
||||||| |||| | |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1 ATGGAGAAAGCTGTTGAAAGACAAAAGATTTTGCTTCGTCATCTCAATCCAATTTCTTCT 60
Query 244 TCTAATTCTTCTCTTAAACATGAACCTTCTCTTCTGTCTCCTGTGAATTGTGTTTCTGAA 303
|||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 61 ACTAATTCTTCTCTTAATCATGAACCTTCTCTTTTGTCTCTTGTGAATTGTGCTTCTGAG 120
Query 304 GTTTCCCCAATGGCTGCTTTTGGAGATGACATTGTGATTGTAGCGGCATATCGTACCGCC 363
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GTTTCCCCAATGGCTGCTTTTGGAGATGACATTGTGATTGTAGCGGCTTATCGTACCGCC 180
Query 364 ATTTGCAAAGCGAGACGTGGAGGTTTCAAAGACACTCTTCCTGATGATCTTCTTGCTTCT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 ATTTGCAAAGCGAGACGTGGAGGTTTCAAAGACACTCTTCCTGATGATCTTCTAGCTTCT 240
Query 424 GTTCTTAAGGCTGTAGTGGAAAGAACATCTTTGGATCCAAGTGAAGTTGGTGATATCGTT 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GTTCTTAAGGCTGTAGTGGAAAGAACATCTTTGGATCCAAGTGAAGTTGGGGATATCGTT 300
Query 484 GTTGGTACCGTGATAGCGCCTGGTTCTCAGAGAGCAATGGAGTGTAGAGTTGCAGCTTAT 543
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GTTGGTACCGTGATAGCGCCCGGTTCTCAGAGAGCAATGGAGTGTAGAGTAGCAGCTTAT 360
Query 544 TTTGCTGGTTTTCCTGACTCCGTGCCAGTTAGAACTGTCAATAGACAATGCTCATCAGGA 603
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTGCTGGTTTTCCTGACACCGTGCCAGTTAGAACTGTCAATAGACAATGCTCATCAGGA 420
Query 604 CTACAAGCAGTTGCTGATGTTGCTGCTTCCATTAGAGCTGGTTATTACGACATTGGTATT 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTACAAGCAGTTGCTGATGTTGCTGCTTCCATTAGAGCTGGTTATTACGACATTGGTATT 480
Query 664 GGTGCTGGAGTGGAATCAATGTCAACTGATCATATTCCTGGAGGCGGCTTTCATGGCTCT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 GGTGCTGGAGTGGAATCAATGTCAACTGATCATATTCCTGGAGGCGGCTTTCATGCCTCT 540
Query 724 AATCCAAGAGCACAGGATTTCCCAAAAGCCCGTGATTGTTTGCTTCCAATGGGAATTACT 783
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 AATCCAAGAGCACAAGATTTCCCGAAAGCCCGTGATTGTTTGCTTCCAATGGGAATTACT 600
Query 784 TCTGAAAACGTTGCAGAAAGGTTCGGTGTCACAAGAGAAGAGCAAGATATGGCTGCGGTG 843
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTGAAAACGTTGCAGAAAGATTCGGTGTCACAAGAGAAGAGCAAGATATGGCTGCGGTG 660
Query 844 GAGTCTCACAAACGCGCTGCAGCTGCAATCGCGTCTGGTAAACTCAAGGATGAAATCATT 903
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 661 GAGTCTCACAAACGCGCTGCAGCTGCTATCGCGTCTGGTAAACTCAAGGATGAAATAATT 720
Query 904 CCTGTTGCTACTAAGATTGTGGACCCTGAGACTAAAGCAGAGAAGGCAATCGTCGTATCT 963
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 721 CCTGTTGCTACTAAGATCGTGGACCCCGAGACTAAAGCAGAGAAGGCAATCGTTGTATCT 780
Query 964 GTTGATGACGGTGTACGTCCAAACTCAAACATGGCAGATTTGGCAAAGCTGAAGACTGTC 1023
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 781 GTTGATGACGGTGTACGTCCAAACTCAAACTTGGCAGATCTGGCAAAGCTGAAGACCGTC 840
Query 1024 TTTAAACAGAACGGTTCCACCACAGCTGGCAATGCTAGTCAGATCAGTGATGGTGCTGGA 1083
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 841 TTTAAACAGAACGGTTCCACCACAGCTGGTAATGCTAGCCAGATCAGTGATGGTGCTGGA 900
Query 1084 GCAGTACTGCTAATGAAGAGAAGTTTGGCTATGAAGAAGGGACTTCCCATTCTTGGAGTA 1143
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 GCTGTACTGCTAATGAAGAGAAGTTTGGCAATGAAGAAGGGACTTCCCATTCTTGGAGTA 960
Query 1144 TTCAGGAGTTTTGCTGTTACTGGTGTGGAACCATCTGTAATGGGTATTGGTCCAGCTGTT 1203
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 961 TTCAGGAGTTTTGCTGTTACTGGTGTGGATCCATCTGTAATGGGTATCGGTCCGGCTGTT 1020
Query 1204 GCCATTCCCGCTGCAACTAAGCTCGCAGGGCTCAACGTCAGCGATATTGATCTATTCGAG 1263
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1021 GCCATTCCCGCTGCAACTAAACTTGCAGGCCTCAACGTCAGCGATATTGATCTATTCGAG 1080
Query 1264 ATCAATGAGGCATTTGCATCTCAGTATGTGTACTCTTGCAAGAAGTTAGAGCTGGATATG 1323
|||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||
Sbjct 1081 ATCAATGAGGCATTTGCATCTCAGTATGTGTACTGTTGCAAAAAGCTAGAGCTAGATATG 1140
Query 1324 GAAAAGGTCAATGTTAATGGAGGAGCCATTGCTATTGGCCATCCCCTGGGTGCTACAGGA 1383
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1141 GAAAAGGTCAATGTTAATGGAGGAGCCATTGCTATTGGCCATCCTCTGGGTGCTACAGGA 1200
Query 1384 GCTCGATGTGTTGCGACATTGTTGCACGAGATGAAGCGGAGAGGAAAAGATTGCCGCTTT 1443
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 GCTCGATGTGTTGCGACATTGTTGCATGAGATGAAGCGGAGAGGAAAAGATTGCCGCTTT 1260
Query 1444 GGAGTAATCTCAATGTGCATAGGCACTGGAATGGGAGCTGCAGCTGTTTTTGAGAGGGGA 1503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GGAGTAATCTCAATGTGCATAGGCACTGGAATGGGAGCTGCAGCTGTTTTTGAGAGGGGG 1320
Query 1504 GACTCTGTTGATAACTTGTCCAACGCTCGTGTGGCTAACGGGGATAGTCATTAG 1557
||||||||||||||||||||||||||||| |||||||| || ||| ||||||||
Sbjct 1321 GACTCTGTTGATAACTTGTCCAACGCTCGAGTGGCTAATGGCGATGGTCATTAG 1374
> Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1
Length=1769
Score = 416 bits (225), Expect = 3e-115
Identities = 911/1229 (74%), Gaps = 100/1229 (8%)
Strand=Plus/Plus
Query 324 TGGAGATGACATTGTGATTGTAGCGGCATATCGTACCGCCA-TTTGCAAAG-CGAGACGT 381
||||||||| |||||||||| |||||| || | | | ||| | ||| ||| | | ||||
Sbjct 295 TGGAGATGATGTTGTGATTGTCGCGGCACATAGGA-CTCCACTATGC-AAGTCTAAACGT 352
Query 382 GG-AGGTTTCAAAGACACTCT-TCCTGATGATCTT-CTTGCTTCTGTTCTT-AAGGCTGT 437
|| | ||||| || || | |||||||||| || || || ||||| || | ||| |
Sbjct 353 GGCA-ACTTCAAGGATAC-ATATCCTGATGAT-TTGCTCGCACCTGTT-TTGAGGGC-AT 407
Query 438 AG-TGGA-AAGAACATCTTTGGATCCAAGTGAAGTTGGTGATATCGTTGTTGGTACCGTG 495
| | || ||| ||| | | | ||||||||||| || || || ||||| ||||| ||
Sbjct 408 TGATAGAGAAG-ACAAATCTAAACCCAAGTGAAGTAGGGGACATTGTTGTGGGTACTGTT 466
Query 496 ATAGCGCCTGGTTCTCAGAGAG-CAATGGAGTGTA-GA-GT-TGCAGCTTATTTTGCTGG 551
| || ||||| |||||||||| || | || || | || || ||| | || | ||||||
Sbjct 467 TTGGCACCTGGATCTCAGAGAGCCAGT-GAATGCAGGATGTCTGC-G-TT-CTATGCTGG 522
Query 552 TTTTCCTGACTCCGTGCCAGTTAGAACTGTCAATAGACAATGCTCATCAGGACTACAAGC 611
||| ||||| ||||| | || |||||||| |||||||| |||||||| || || || ||
Sbjct 523 TTTCCCTGAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGC 582
Query 612 AGTTGCTGATGTTGCTGCTTCCATTAGAGCTGG-TTATTACGACATTGGTATTGGTGCTG 670
|||||||| || || ||| |||||| |||||| || ||| ||||||||||| || ||||
Sbjct 583 TGTTGCTGACGTAGCCGCTGCCATTAAAGCTGGATT-TTATGACATTGGTATCGGGGCTG 641
Query 671 GAG-TGGAATCAATGTCAACTGAT-CATAT-TCCT-GGAGGCGGCTTTCATGGCTCTAAT 726
| | |||| || ||| | || || || || | | ||| | || ||| | || ||
Sbjct 642 G-GTTGGAGTCCATGACTACCAATCCA-ATGGCGTGGGAAG-GG---TCA--G-TC-AA- 690
Query 727 CCAAG-AG-CACAGGA-TTTCCCAAAAGC-CCGTGATTGT-TTGCTTCCAATGGGAATTA 781
|| || | | || | ||| | |||| | | ||||| || ||||| ||||| |||
Sbjct 691 CCCAGCGGTGA-AGCAGTTT-GTACAAGCACAG-AATTGTCTT-CTTCCTATGGGTGTTA 746
Query 782 CTTCTGAAAACGTTGCAGAAAGGTTCGGTGTCACAAGAG-AAGAGCAAGAT-ATGGCTGC 839
|||| ||||| || ||| || | || |||||| |||| | | ||||||||| | |||||
Sbjct 747 CTTCAGAAAATGTAGCACAACGCTTTGGTGTCTCAAG-GCAGGAGCAAGATCA-AGCTGC 804
Query 840 GGTGGAGTCTCACA-AACGCGCTGCAGCTGC-AATCGCGT-CTGGTAAACTCAAGGATGA 896
|| || || |||| || | || || ||||| | | || | |||||||| ||||||||||
Sbjct 805 TGTTGACTCGCACAGAAAG-GCAGCTGCTGCTACT-GC-TGCTGGTAAATTCAAGGATGA 861
Query 897 AATCATTCCTGTTGCTACTAAGATTGTGGACCCTGAGACTAAAGCA-GAGAAGGCAATCG 955
|||||||||||| || ||| |||| ||||| ||||| | | ||||| | ||
Sbjct 862 GATCATTCCTGTTAAGACCAAGCTTGTTGACCCAAAGACTGGTG-ATGAGAAACCCAT-- 918
Query 956 T-C-GTATCTGTTGATGACGGTGTACGTCCAAACTCA-AAC-ATGGCAGAT-TTGGCAAA 1010
| | || ||||||||||| ||| | || || ||| || ||| | || | |||| ||
Sbjct 919 TACAGTTTCTGTTGATGATGGTATCCGACC-AAC-CACAACTCTTGCTTCTCTTGG-GAA 975
Query 1011 GCTGAAGACTGTCTTTAA-ACAGAACGGTTCCACCACAGCTGGCAATGCTAGTC-AGATC 1068
||||||| | || ||||| | || | || |||| || ||||| ||| | || | || |
Sbjct 976 GCTGAAGCCAGTGTTTAAGA-AGGATGGCACCACAACTGCTGGAAATTCGAGCCAAG-TA 1033
Query 1069 AGTGATGGTGCTGGAGCAGTACTGCTAATGAAGAGAAGT-TTGGCTATG-AAGAAGGGAC 1126
||||||||||| ||||| || || || |||||||||||| || || ||| || || ||||
Sbjct 1034 AGTGATGGTGCAGGAGCTGTTCTCCTCATGAAGAGAAGTGTT-GCAATGCAA-AAAGGAC 1091
Query 1127 TTCCCATTCTTGGAGTATTCAGGAGTTTTGCTGTTA-CTGGTGTGGAACCAT-CTGTAAT 1184
|||| ||||||| |||||||||| ||||||| | |||||| | ||| | | | ||
Sbjct 1092 TTCCTGTTCTTGGTGTATTCAGGACATTTGCTG-CAGTTGGTGTTG-ACCCTGCAATCAT 1149
Query 1185 GGGTATTGGTCCAGCTGTTGCCATTCCCGCTGCAACTAA-GCTCGCAGGGCT-CAACGTC 1242
||||||||||||||| ||||||||||| |||||| ||| || || || | ||| |
Sbjct 1150 GGGTATTGGTCCAGCAGTTGCCATTCCTGCTGCAGTTAAGGC-AGCTGGTTTAGAACTTG 1208
Query 1243 AGCGATATTGATC-TATTCGAGATCAATGAGGCATTTGCATCTCAGTATGTGTACT-CTT 1300
| || ||||| | | || |||||||||||||||||||||||||||| ||| || | |
Sbjct 1209 A-TGACATTGA-CTTGTTTGAGATCAATGAGGCATTTGCATCTCAGTTTGTTTATTGCC- 1265
Query 1301 GCAAGAAGTTAG-AGCTGGAT--ATG-GAAAAGGTCAATGTTAATGGAGGAGCCATTGCT 1356
| || || || | | || || | | ||||| ||||||| || ||||| || || ||
Sbjct 1266 GTAACAAATTGGGA-CTTGACCCA-GAGAAAA--TCAATGTCAACGGAGGCGCAATGGCC 1321
Query 1357 ATTGGCCATCCCCTGGGTGCTACAGGAGCTCGATGTGTTGCGACATTGTTGCACGAGATG 1416
|| |||||||| |||| ||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1322 ATAGGCCATCCTTTGGGCGCTACAGGAGCGCGTTGTGTTGCTACATTGTTGCACGAGATG 1381
Query 1417 AAGCGGAGAGGAAAAGATTGCCGCTTTGGAGTAATCTCAATGTGCATAGGCACTGGAATG 1476
|| || | |||||||| ||||| ||||||||| | ||||||||||| || || || |||
Sbjct 1382 AAACGCCGTGGAAAAGACTGCCGTTTTGGAGTAGTGTCAATGTGCATTGGGACGGGGATG 1441
Query 1477 GGAGCTGCAGCTGTTTTTGAGAGGGGAGA 1505
|| || |||||||| |||||||| |||||
Sbjct 1442 GGTGCAGCAGCTGTGTTTGAGAGAGGAGA 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5