BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48890.1
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949333 jgi|Araly1|949333|scaffold_801220.1 765 0.0
> Ahg949333 jgi|Araly1|949333|scaffold_801220.1
Length=568
Score = 765 bits (414), Expect = 0.0
Identities = 488/524 (93%), Gaps = 4/524 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGATCATTACCATCAAGTAGAAGTGGAGGGAGAAGAAGAGATCAAGCCAAGCAAA 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 26 ATGGAAGATCATTACCATCAAGTAGAAGTGGAGGAAGAAGAAGAGATCAAGCCATCCAAA 85
Query 61 GAAGCCAACAAGACAGACGAAAACACATCATCATTAAGAATATTCCCCTGCCTCTTTTGT 120
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 86 GAAGCCAACAAGACAGACGAAGACACATCATCATCAAGAATATTCCCCTGCCTCTTTTGT 145
Query 121 TCTAGAAAGTTCCATAGCTCCCAAGCCCTAGGAGGCCACCAGAACGCCCACAAGAAGGAG 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 146 TCTAGAAAGTTCCATAGCTCCCAAGCCCTAGGAGGCCACCAAAACGCCCACAAGAAGGAG 205
Query 181 CGAACCGCTGCTAGAAGAGCCAAAAGGGCTTATGATTTTGTCAACAACAATGACTTCCTT 240
||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||| |||
Sbjct 206 AGAACCGCTGCTAGAAGAGCGAAAAGGGCTTACGATTTCATCAACAGCAATGACTTGCTT 265
Query 241 CACACGTTACCTGTTTTCTTATCCTCTCCCTCTCAACATCACTTGACCATCTTAGGCTAC 300
||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 266 CACACGTTACCTGTTTTCTTATCCTCTCCTTCTCGACGCCACTTGACCATCTTAGGCTAC 325
Query 301 CCTGCTTCTGCCTCCGTTGCCTGTTTTCC-GACGGTTCATCCCGACCATCCGATTTTCAA 359
|||||||||||||| |||||||| ||||| | |||||||| | ||||||||||| ||||
Sbjct 326 CCTGCTTCTGCCTCTGTTGCCTGCTTTCCAG-CGGTTCATACTGACCATCCGATCTTCAG 384
Query 360 ATCCAGTGGTTCTCATGTCGTGTTGGCTACATCCCACCAAGGTAGAGATTGCAAAGGAGG 419
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 385 ATCCAGTGGTTCTCATGTCGTGTTGGCCACATCCCACCAAGGTAGAGAGTGCAAAGGAGG 444
Query 420 GTACTGTTG-TCAACAACGTGTAGACATTTTGGATCATCATTATAACGTGGTCAATAGTG 478
||| | ||| |||||||| ||| ||||||||||||||||| ||||| ||||| |||||||
Sbjct 445 GTATT-TTGGTCAACAACATGTTGACATTTTGGATCATCACTATAATGTGGTGAATAGTG 503
Query 479 ACAAGGGTAAAGATCAGTGTCTTGATCTCTCCCTACATTTGTGA 522
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct 504 ACAAGGGTAAAGATCAGTGTCTTGATCTCTCCCTCCATTTGTGA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001483322
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5