BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48905.1
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916422 jgi|Araly1|916422|Al_scaffold_0008_1173 388 7e-108
> Ahg916422 jgi|Araly1|916422|Al_scaffold_0008_1173
Length=255
Score = 388 bits (210), Expect = 7e-108
Identities = 241/256 (94%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 1 ATGTCTACG-AAATTATTTTCTTATTTCATGCTTTTGGTAGTTCTCTTCTCAGTATTAAC 59
||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTCTA-GAAAATTATTTTCTTTTTTCATGGTTTTGGTAGTTCTCTTCTCAGTATTATT 59
Query 60 GATTATTCCTAAAACTGAGGCACAAAAGAGATGTAGACAAGAACTAGAGCCGGGAAAGCA 119
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 60 GATTATTCCTAAAACTGAGGCACAAAAGAGATGCAGACAAGAACTAGAGCCAGGAAAGCA 119
Query 120 ATGTGTGTTGGCAAAGTGTAGGGAACTGTGTTTCAAACAATTGAAAGGATTCGGGAGTTG 179
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 ATGTGTGTTGGCAAACTGTAGGGAACTGTGTTTCAAAAAATTGAAAGGATTCGGGAGTTG 179
Query 180 TATTGAGAAGCCACCAGGCTCTTCTAAGTATACATGTAATTGTTTCTACAATTGTGGTCC 239
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct 180 TATTGAGAAGCCACCAGGCTCTGCTAAGTACACATGTAATTGTTTTTACAATTGTGGTCC 239
Query 240 ACCAGGAtttttttAG 255
||| ||| ||||||||
Sbjct 240 ACCTGGAGTTTTTTAG 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8859676552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5