BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48910.1
Length=2063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494955 jgi|Araly1|494955|fgenesh2_kg.8__771__AT5G48910.1 2957 0.0
> Ahg494955 jgi|Araly1|494955|fgenesh2_kg.8__771__AT5G48910.1
Length=1946
Score = 2957 bits (1601), Expect = 0.0
Identities = 1852/1970 (94%), Gaps = 30/1970 (2%)
Strand=Plus/Plus
Query 16 TTGATTCTCAATGAACCCAACACAGACACTTTTCTCTCCCGGCGGTAACTCGCCGGCGTC 75
||||||||||||||||||||||||||| |||| ||||||||||||||| | |
Sbjct 1 TTGATTCTCAATGAACCCAACACAGACCCTTTACTCTCCCGGCGGTAA--------C--C 50
Query 76 TTCTCCGGCGAGTCATCCATCTTCACTCTTTCCTCAAATCAACAACTGTCGAACTATAAG 135
||||||| | || | || | |||||||||||||||||||||||||||||||||||
Sbjct 51 --CTCCGGC-A-TC-T---TC--C-CTCTTTCCTCAAATCAACAACTGTCGAACTATAAG 99
Query 136 AGACCTCTCTCAAATCCATGCCGTTTTCATTAAATCTGGTCAAATGCGAGACACTCTCGC 195
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 100 AGACCTCTCTCAAATCCATGCCGTTTTCATCAAATCTGGTCAAATTCGAGACACTCTCGC 159
Query 196 CGCCGCAGAGATTCTCCGATTCTGTGCTACCTCCGATCTCCACCACCGTGACCTTGACTA 255
||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct 160 CGCCGCAGAGATTCTTCGATTCTGTGCGACCTCCGATCTCAACCACCGTGACCTTGATTA 219
Query 256 CGCACATAAGATCTTTAATCAAATGCCTCAACGAAATTGCTTCTCTTGGAATACTATAAT 315
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CGCACACAAGATCTTTAATCAAATGCCTCAACGAAATTGCTTCTCTTGGAATACTATAAT 279
Query 316 CAGAGGTTTCAGTGAGAGTGACGAAGACAAAGCTCTGATCGCAATCACATTATTCTACGA 375
||||||||| |||||||||||||||||||||||||| || ||||||||||| |||| |
Sbjct 280 CAGAGGTTTTAGTGAGAGTGACGAAGACAAAGCTCTAATTGCAATCACATTGTTCTTTAA 339
Query 376 GATGATGAGTGATGAGTTTGTTGAACCGAATCGGTTTACGTTTCCCTCTGTTCTTAAGGC 435
||||||||||||||||||| | |||||||| |||||||||||||| ||||| ||||||||
Sbjct 340 GATGATGAGTGATGAGTTTATCGAACCGAACCGGTTTACGTTTCCGTCTGTGCTTAAGGC 399
Query 436 TTGTGCGAAAACTGGGAAGATTCAAGAAGGTAAGCAGATTCATGGTTTGGCTTTGAAGTA 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GTGTGCGAAAACTGGGAAGATTCAAGAAGGTAAGCAGATTCATGGTTTGGCTTTGAAGTA 459
Query 496 TGGATTTGGTGGTGATGAATTTGTGATGAGTAATCTTGTTAGAATGTATGTGATGTGTGG 555
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TGGATTTGGTGGTGATGAGTTTGTGATGAGTAATCTTGTTAGAATGTATGTGATGTGTGG 519
Query 556 TTTTATGAAAGATGCTCGTGTGTTGTTTTATAAGAACATTATAGAGAAAGATATGGTGGT 615
||| |||||||||||| |||| |||||||||||||||||||| |||| ||| ||||||||
Sbjct 520 TTTGATGAAAGATGCTTGTGTTTTGTTTTATAAGAACATTATTGAGAGAGAGATGGTGGT 579
Query 616 GATGACTGATAGAAGAAAGAGAGATGGTGAAATAGTTTTGTGGAATGTTATGATTGATGG 675
||||| ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 580 GATGATTGATAGAAGAAAGAGAGATGGTGAAGTTGTTTTATGGAATGTTATGATTGATGG 639
Query 676 TTATATGAGACTTGGTGATTGTAAAGCTGCACGGATGTTGTTTGATAAAATGCGTCAAAG 735
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 640 TTATATGAGACTTGGTGATTGTAAAGCTGCAAGGATGTTGTTTGATAAAATGCGTCAAAG 699
Query 736 AAGCGTTGTTTCGTGGAATACGATGATATCGGGTTATTCGCTGAACGGGTTTTTCAAAGA 795
||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || ||
Sbjct 700 AAGCGTTGTTTCGTGGAATACGATGATATCGGGTTATTCGCAGAACGGTTTTTTTAAGGA 759
Query 796 TGCTGTTGAGGTTTTTCGTGAGATGAAGAAAGGGGAT-AT-TA-GACCGAATTATGTTAC 852
|||||||||||||||||||||||||||||||||||| || | | ||||||||||||||
Sbjct 760 TGCTGTTGAGGTTTTTCGTGAGATGAAGAAAGGGGAGGATATCCGTCCGAATTATGTTAC 819
Query 853 TTTGGTTAGTGTTCTTCCTGCTATTTCACGGCTTGGGTCTTTAGAGTTGGGAGAATGGTT 912
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 820 TTTGGTTAGTGTTCTTCCTGCGATTTCACGGCTTGGGTCGTTAGAGTTAGGAGAATGGTT 879
Query 913 GCATTTGTATGCAGAGGATAGTGGAATTAGGATTGATGATGTGCTTGGCTCTGCTTTGAT 972
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 880 GCATTTGTATGCTGAGGATAGCGGAATTAGGATTGATGATGTGCTTGGCTCTGCTTTGAT 939
Query 973 TGATATGTATTCGAAATGTGGGATCATTGAGAAAGCGATTCATG-TATTTGAGAGGTTAC 1031
||||||||| ||||||||||||||||| |||||||||||| | | | |||||||| ||||
Sbjct 940 TGATATGTACTCGAAATGTGGGATCATCGAGAAAGCGATT-AGGGTGTTTGAGAGATTAC 998
Query 1032 CTAGAGAGAACGTGATTACTTGGAGTGCGATGATTAACGGGTTTGCTATACATGGCCAGG 1091
|| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 999 CTCGAGAGAACGTGATTACTTGGAGTGCGATGATAAACGGGTTTGCTATACACGGCCAGG 1058
Query 1092 CAGGTGATGCTATTGACTGTTTTTGTAAAATGAGGCAGGCTGGAGTTCGACCTAGTGATG 1151
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1059 CAGGTGATGCTATTGACTGTTTTTGTAAAATGAGGCAGGCGGGAGTTCGGCCTAGCGATG 1118
Query 1152 TTGCCTACATTAATCTTTTGACTGCTTGTAGCCATGGCGGGTT-GGTAGAAGAAGGAAGG 1210
|||||||||||| ||| ||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 1119 TTGCCTACATTAGTCTCTTGACTGCTTGTAGCCATG-CTGGTTTGGTAGAAGAAGGAAGG 1177
Query 1211 AGATATTTCAGTCAGATGGTGAGTGTGGATGGTTTAGAGCCTAGGATTGAACACTACGGG 1270
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1178 AGATATTTCAGTCAAATGGTGAGTGTAGATGGTTTAGAGCCTAGGATTGAACACTACGGG 1237
Query 1271 TGTATGGTTGATTTATTGGGTCGTTCGGGTCTTCTTGATGAGGCTGAGGAGTTTATACTT 1330
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 TGTATGGTTGATCTATTGGGTCGTTCGGGTCTTCTTGATGAGGCTGAGGAGTTTATACTT 1297
Query 1331 AATATGCCTATAAAACCAGATGATGTGATATGGAAAGCACTTTTGGGTGCTTGCAGAATG 1390
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1298 AATATGCCTATAAAACCAGATGATGTTATATGGAAAGCACTTTTGGGTGCTTGCAGAATG 1357
Query 1391 CAGGGAAATGTCGAGATGGGCAAGCGCGTTGCCAATATTCTGATGGATATGGTTCCTCAT 1450
|| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1358 CACGGAAATGTCGAGATGGGCAAGCGTGTGGCCAACATTCTGATGGATATGGTTCCTCAT 1417
Query 1451 GACAGTGGAGCTTATGTCGCCCTCTCAAACATGTATGCTTCTCAAGGAAACTGGTCAGAG 1510
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1418 GACAGTGGAGCTTATGTTGCTCTCTCAAACATGTATGCATCTCAAGGAAACTGGTCAGAG 1477
Query 1511 GTTTCAGAGATGAGGCTGAGAATGAAGGAGAAGGATATAAGAAAAGA-CCCTGGGTGTAG 1569
||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 1478 GTTTCAGAGATGAGGCTGAGAATGAAGGAGATGGATATAAGAAAAGATCCC-GGGTGTAG 1536
Query 1570 TTTGATCGACATTGATGGCGTGCTTCATGAGTTTGTTGTGGAAGATGATTCACACCCAAA 1629
|| |||||||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 1537 TTGGATCGACATTGATGGCGTGCTTCACGAGTTTCTTGTGGAAGATGATTCTCACCCAAG 1596
Query 1630 AGCCAAAGAAATCAACTCAATGCTCGTAGAAATCTCAGACAAACTGAGACTAGCTGGGTA 1689
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1597 AGCCAAAGAAATCAACTCAATGCTCGTAGAAATCTCAGACAAACTGAGACTAGCCGGGTA 1656
Query 1690 TAGACCAATCACCACACAGGTTTTGTTAAACTTGGAGGAAGAAGATAAAGAAAATGTACT 1749
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1657 TAGACCAATCACCACACAGGTTTTGTTAAACTTGGAGGAAGAGGATAAAGAAAACGCACT 1716
Query 1750 TCATTACCACAGCGAGAAGATCGCTACAGCGTTTGGGTTGATAAGCACGAGCCCTGGCAA 1809
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1717 TCATTATCACAGCGAGAAGATGGCTACTGCGTTTGGGTTGATAAGCACGAGCCCTGGCAA 1776
Query 1810 ACCAATACGCATTGTTAAGAACCTACGTATCTGTGAGGATTGTCATTCGTCCATCAAACT 1869
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1777 ACCAATACGCATTGTTAAGAACCTACGCATCTGTGAGGATTGTCATTCGTCCATCAAACT 1836
Query 1870 CATCTCCAAAGTTTACAAGAGAAAAATAACGGTACGAGACCGGAAACGTTTTCACCATTT 1929
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1837 CATCTCCAAAGTTTACAAGAGAAAGATAACGGTACGAGACCGGAAACGTTTTCACCATTT 1896
Query 1930 CCAAGATGGCTCATGCTCGTGTATGGATTATTGGTGAAACTAAACATAAA 1979
||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1897 CCAAGATGGCTCATGCTCGTGCATGGATTATTGGTGAAAGTAAACATAAA 1946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77589829065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5