BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48920.1

Length=786
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474703 jgi|Araly1|474703|fgenesh2_kg.1__4657__AT5G48920.1         597    4e-170


> Ahg474703 jgi|Araly1|474703|fgenesh2_kg.1__4657__AT5G48920.1
Length=690

 Score =  597 bits (323),  Expect = 4e-170
 Identities = 553/656 (84%), Gaps = 48/656 (7%)
 Strand=Plus/Plus

Query  52   ACATACATACTCCCAAAATGGCTGCCTCTGTGGAATACTTTCCCTATTACTCACCAccct  111
            ||| ||| || |||||||||||||||||||| || | ||| |||| |||| ||||||| |
Sbjct  16   ACA-ACACACGCCCAAAATGGCTGCCTCTGTTGACTTCTTCCCCTTTTACCCACCACCGT  74

Query  112  cccatcaacatcctctccc-t-t-c--t-------cca--g--t--tccaccccctcctt  153
            ||||||||||||||||||| | | |  |       |||  |  |  ||| ||||||||||
Sbjct  75   CCCATCAACATCCTCTCCCTTCTCCGTTCCCAGCCCCACCGCATCATCCGCCCCCTCCTT  134

Query  154  cccacatt-tcccctccaccacctccattttctcctcctcatcacccaccaccaccacat  212
            |||||||| | ||||||| | || |||| ||||| ||| ||| ||||||| ||| | | |
Sbjct  135  CCCACATTGT-CCCTCCATCGCCCCCATCTTCTCGTCCCCATTACCCACCGCCA-C-C-T  190

Query  213  ttttctcctcctcatcagccaccgccat-caccatatcctcatcctca-tccgccaccac  270
              ||| ||| ||  |  |   || || | ||||  | |||| ||| || ||| |||||  
Sbjct  191  CCTTC-CCT-CT--T-TG-GTCCTCC-TCCACC--A-CCTCTTCCCCATTCC-CCACC-T  238

Query  271  catcaccatatcctcatccccatcagccaccgcctccacctcacgttcttccaccaccac  330
            |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  C--CACCATATCCTCGTCCCCATCAGCCACCGCCTCCACCTCACGTTCTTCCACCACCAC  296

Query  331  caccaacaccagcaccGGGGCATCATGTTATCATTGTGGTTGTTATCTCTCTTGGAAGTT  390
            || |  || |  ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  297  CA-C--CA-C--CACCGGGGCATCATGTTATCATTGTGGTTGTTATCTCTCTTGGCAGTT  350

Query  391  TGTTTTTTCTTGCATTCCTCGCTGCTGCTCTCTTCTGCTATCTCAAGAAAAGAAGAAAGT  450
            ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  351  TGTTCCTTCTTGCATTCCTCGCTGCTGCTCTCTTCTGCTATCTCAAGAAAAGAAGAATGT  410

Query  451  CTTCTACAAAGGCTGAGATTATCGAGTTTGATGAACACCTCAAAGTCCAAGAAACCATAG  510
            ||||||||||| ||||||||||| |||||||||||||||||||||||||||||  |||||
Sbjct  411  CTTCTACAAAGACTGAGATTATCAAGTTTGATGAACACCTCAAAGTCCAAGAAGTCATAG  470

Query  511  TGCAAGGACCCCATGGCGAACAAACGAGAGTGGTAATGCTTGAAGAGGACATTCATTTGG  570
            ||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct  471  TGCCAGGACCCCATGGCGAACCAACTAGAGTGGTAATGCTTGAAGAAGACATTCATTTGG  530

Query  571  TAGAGGATATTCACAAGACTGAAAAGCTTAGCCGTCCTAGTCACCTCAGTTCAACTGGAA  630
             |||||| |||||||||||||||||||||||| |  |||  || ||||||||||||||| 
Sbjct  531  AAGAGGACATTCACAAGACTGAAAAGCTTAGCAGAGCTAACCATCTCAGTTCAACTGGAG  590

Query  631  GACATGCCATTGATATTTCAGATCCCAATCATCATTTTACTGAGCAA-AAGTCCTA  685
            ||||||| |||||||| |||||||||||||| || |||| |||| || ||| ||||
Sbjct  591  GACATGCGATTGATATATCAGATCCCAATCACCACTTTATTGAG-AACAAGGCCTA  645


 Score = 63.9 bits (34),  Expect = 2e-09
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  750  TAAATATGGTACCAAATCTTGCAATCCAAAACTTGAT  786
            |||||| ||||||||||||||||||||||||||||||
Sbjct  654  TAAATAAGGTACCAAATCTTGCAATCCAAAACTTGAT  690



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29011539837


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5