BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48930.1
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924173 jgi|Araly1|924173|scaffold_105454.1 1812 0.0
> Ahg924173 jgi|Araly1|924173|scaffold_105454.1
Length=1342
Score = 1812 bits (981), Expect = 0.0
Identities = 1204/1315 (92%), Gaps = 2/1315 (0%)
Strand=Plus/Plus
Query 70 TATGAAAATTAACATCAGAGATTCCACCATGGTCCGGCCTGCCACCGAGACACCAATCAC 129
|||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||
Sbjct 20 TATGAAAATTAACATCCGAGATTCCACCATGGTCCGGCCTGCCGCCGAGACGCCTATCAC 79
Query 130 TAATCTTTGGAACTCCAACGTCGACCTTGTCATCCCCAGATTCCATACCCCTAGTGTCTA 189
||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 80 TAATCTTTGGAACTCCAACGTTGACCTTGTTATCCCCAGATTCCACACCCCCAGTGTCTA 139
Query 190 CTTCTACAGACCCACCGGCGCTTCCAATTTCTTTGACCCTCAGGTCATGAAGGAAGCTCT 249
|||||||||||||||||| || ||||||||||| ||||||||| |||||||||| |||||
Sbjct 140 CTTCTACAGACCCACCGGTGCCTCCAATTTCTTCGACCCTCAGATCATGAAGGACGCTCT 199
Query 250 TTCCAAAGCCCTTGTCCCTTTTTACCCTATGGCTGGTCGCTTGAAGAGAGACGATGATGG 309
||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 200 CTCCAAGGCCCTCGTCCCCTTTTACCCCATGGCCGGTCGCTTGAAGAGAGACGATGATGG 259
Query 310 TCGTATTGAGATCGATTGTAACGGTGCTGGTGTTCTCTTCGTTGTGGCTGATACTCCTTC 369
|||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||| ||
Sbjct 260 TCGTATCGAGATTGATTGCAACGGCGCCGGTGTTCTCTTCGTCGTTGCCGATACTCCCTC 319
Query 370 TGTTATCGATGATTTTGGTGATTTTGCTCCTACCCTTAATCTCCGTCAGCTTATTCCCGA 429
||| ||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 320 TGTCATCGATGATTTTGGTGACTTCGCTCCTACCCTCAATCTCCGCCAGCTTATTCCCGA 379
Query 430 AGTTGATCACTCCGCTGGCATTCACTCTTTCCCGCTTCTCGTTTTGCAGGTGACTTTCTT 489
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 380 TGTTGATCACTCCGCCGGCATCCACTCTTTCCCGCTTCTCGTTTTGCAGGTGACCTTCTT 439
Query 490 TAAATGTGGGGGAGCTTCACTTGGGGTTGGGATGCAACATCACGCGGCAGATGGTTTCTC 549
|||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 440 TAAATGCGGGGGAGCTTCCCTTGGGGTTGGTATGCAACACCACGCTGCAGATGGTTTCTC 499
Query 550 TGGTCTTCATTTTATCAACACATGGTCTGATATGGCTCGTGGTCTTGACCTAACCATTCC 609
|||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 500 TGGTCTCCACTTTATCAACACATGGTCTGATATGGCCCGTGGTCTTGACCTTACCATTCC 559
Query 610 ACCTTTCATTGATCGAACACTCCTCCGAGCTAGGGACCCGCCACAGCCTGCTTTTCATCA 669
||| |||||||||||||| |||||||| ||| |||||||||| |||||||||||||||||
Sbjct 560 ACCCTTCATTGATCGAACCCTCCTCCGCGCTCGGGACCCGCCTCAGCCTGCTTTTCATCA 619
Query 670 TGTTGAATATCAGCCTGCACCAAGTATGAAGATACCTCTTGATCCGTCTAAATCAGGACC 729
|||||||||||||||||| || ||||||| ||| |||||||||||||| |||||||| ||
Sbjct 620 TGTTGAATATCAGCCTGCCCCCAGTATGAGGATCCCTCTTGATCCGTCCAAATCAGGCCC 679
Query 730 TGAGAATACCACTGTCTCTATATTCAAATTAACACGAGACCAGCTTGTTGCTCTTAAGGC 789
||| |||||||| |||||||| ||||||||| |||| ||||||||||||||||| |||||
Sbjct 680 TGACAATACCACCGTCTCTATTTTCAAATTATCACGCGACCAGCTTGTTGCTCTCAAGGC 739
Query 790 GAAATCCAAGGAGGATGGGAACACTGTCAGCTACAGCTCATACGAGATGTTGGCAGGGCA 849
|||||||||||||||||||||| ||| || |||||||||||||||||| ||||||| ||
Sbjct 740 TAAATCCAAGGAGGATGGGAACATTGTAAGTTACAGCTCATACGAGATGCTGGCAGGCCA 799
Query 850 TGTGTGGAGATCAGTGGGAAAGGCGCGAGGGCTTCCAAACGACCAAGAGACGAAACTGTA 909
||||||||||||||||| |||||||| || |||||| ||||||||||||| ||| ||||
Sbjct 800 CGTGTGGAGATCAGTGGGCAAGGCGCGCGGACTTCCAGACGACCAAGAGACCAAATTGTA 859
Query 910 CATTGCAACTGATGGAAGGTCTAGACTACGTCCGCAGCTGCCTCCTGGTTACTTTGGGAA 969
|||||||||||||||||||| ||||| | |||||||| || |||||||||||||| ||
Sbjct 860 TATTGCAACTGATGGAAGGTCCAGACTGCACCCGCAGCTTCCCCCTGGTTACTTTGGCAA 919
Query 970 TGTGATATTCACTGCAACACCATTGGCTGTTGCAGGGGATTTGTTATCTAAGCCAACATG 1029
||| |||||||| || ||||||||||| |||||||||||| || |||| |||||||| ||
Sbjct 920 TGTTATATTCACCGCGACACCATTGGCCGTTGCAGGGGATCTGCTATCAAAGCCAACGTG 979
Query 1030 GTATGCTGCAGGACAGATTCATGAT-TTCTTGGTTCGTATGGATGATAACTATCTGAGGT 1088
|||||||||||||| ||||||||| || |||||||| ||||| ||||||||||||||||
Sbjct 980 GTATGCTGCAGGACTTATTCATGATGTT-TTGGTTCGCATGGACGATAACTATCTGAGGT 1038
Query 1089 CAGCTCTTGACTACCTGGAGATGCAGCCTGATCTGTCAGCCCTTGTCCGCGGTGCACATA 1148
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CTGCTCTTGACTACCTGGAGATGCAGCCTGATCTGTCAGCCCTTGTCCGCGGTGCACATA 1098
Query 1149 CCTACAAGTGCCCAAATTTGGGAATCACAAGCTGGGTTAGATTACCTATTTATGATGCAG 1208
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1099 CCTACAAGTGCCCAAATTTGGGAATCACAAGCTGGGTCAGATTACCCATTTATGATGCAG 1158
Query 1209 ACTTTGGTTGGGGTCGTCCTATCTTTATGGGACCTGGTGGAATTCCATACGAGGGTTTGT 1268
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1159 ACTTTGGTTGGGGTCGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTTGT 1218
Query 1269 CTTTTGTGCTACCAAGTCCTACTAATGATGGCAGCTTATCCGTTGCCATTGCCCTCCAAT 1328
| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 1219 CGTTTGTGCTACCAAGTCCTACAAATGATGGCAGCCTATCCGTGGCCATTGCCCTCCAAT 1278
Query 1329 CTGAACACATGAAACTGTTTGAGAAGTTTTTGTTTGAGATATGAGAGCGTTAAGC 1383
||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 1279 CTGAACACATGAAACTGTTTGAGAAGTTTTTGTACGAGATATGAGAGAGATAAGC 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5