BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48945.1
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331300 jgi|Araly1|331300|fgenesh1_pm.C_scaffold_8000643 326 6e-89
> Ahg331300 jgi|Araly1|331300|fgenesh1_pm.C_scaffold_8000643
Length=267
Score = 326 bits (176), Expect = 6e-89
Identities = 230/257 (89%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACAAATAAATTTTTATCTATTTTGTTGCTTTCGTTGATGGCGTTTGCTGCTATT 60
||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 1 ATGGCAACAAACAAATTTTCATCTATTGTGTTGCTTTCGTTGATGGTGTTTGCTGCTATT 60
Query 61 CTGCTGCCAATGATTTCAGGACAAATCATAACATGTTTACCGGGCGAATGTACAAACCCA 120
|| |||||||||||||||||||||| ||| |||||||| ||| | |||||||||| ||
Sbjct 61 TTGTTGCCAATGATTTCAGGACAAATGATACCATGTTTAGAGGGGGTATGTACAAACTCA 120
Query 121 TCGGAATGCAATGCAGCTTGCAAATCAAATGGATACAAAGGAGGGGCTTGTGTAAGCATG 180
||||| ||||||| | | ||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 121 TCGGAGTGCAATGAACCCTGCAAATCAAAAGGATACCAAGGAGGGGCTTGTGTACGCATG 180
Query 181 AGCATAGGCTCAACAACCGGTGCTTGTTGCTGTAAACCTAATTTCAAATCTCAAGATTCT 240
||||||| | || | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AGCATAGACACACCCACCGGTGCTTGTTGTTGTAAACCTAATTTCAAATCTCAAGATTCT 240
Query 241 TTCAAATCTAATGATAT 257
||| ||| |||||||||
Sbjct 241 TTCGAATTTAATGATAT 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9615208428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5