BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48950.1
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494958 jgi|Araly1|494958|fgenesh2_kg.8__774__AT5G48950.1 723 0.0
> Ahg494958 jgi|Araly1|494958|fgenesh2_kg.8__774__AT5G48950.1
Length=493
Score = 723 bits (391), Expect = 0.0
Identities = 461/495 (93%), Gaps = 3/495 (1%)
Strand=Plus/Plus
Query 20 AATGGATCCAAAATCGCCGGAATTTATCATTGATCAGCCGCTTAAAATCTTAGGATTTGT 79
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AATGGATCCAAAATCGCCGGAATTTATCATTGATCCGCCGCTTAAAATCTTAGGATTTGT 60
Query 80 ATTCGATGAGCTCTCCGCCACCAGAGTCTCCGGCCACCTCACCCTAACTGAAAAATGTTG 139
|||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct 61 ATTCGAAGAGCTCTCCGCCACCAGAGTCGCCGGCCATCTCACCGTAACTGAAAAATGTTG 120
Query 140 CCAGCCGTTCAAAGTCTTGCACGGCGGCGTATCGGCTCTGATCGCTGAGGCACTCGCCAG 199
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 121 CCAGCCGTTCAAAGTCTTGCACGGCGGCGTATCGGCTCTGATCGCTGAGGGAATCGCCAG 180
Query 200 TCTCGGCGCCGGAATCGCCTCTGGTTTTAAACGCGTCGCTGGAATCCATCTCTCTATTCA 259
|||||||||||||||||| || |||| |||||||||||| |||||||||||||| |||||
Sbjct 181 TCTCGGCGCCGGAATCGCTTCCGGTTATAAACGCGTCGCCGGAATCCATCTCTCAATTCA 240
Query 260 CCACCTCCGTCCTGCTGCTCTCGGCGAAATTGTCTTCGCCGAATCTTTTCCAGTCTCAGT 319
||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| || ||
Sbjct 241 CCACCTCCGACCTGCTGCTCTCGGCGATATCGTCTTTGCCGAATCTTTTCCAGTTTCCGT 300
Query 320 CGGCAAAAATATTCAGGTGTGGGAGGTCCGGTTATGGAAAGCTAAGAAAACCGAGACACC 379
||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 301 CGGTAAAAATATTCAGGTGTGGGAGGTCCGGTTATGGAAAACCAAGAAAACCGAGAAACC 360
Query 380 GGACAACAA-AATAATGGTATCAACATCACGGGTTACTCTCTTCTGCGGTTTACCTATAC 438
||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 GGAGAACAAGAA-AATGGTATCAACATCGCGGGTTACTCTCTTCTGCGGTTTACCTATAC 419
Query 439 CGGACCATGTTAAAGATGCTCCAGACGAGCTGAAGAAAGTTATATCCAAATTATAAATTC 498
| |||||||| ||||||||||| |||||| ||||||||||||||||||| || ||| |||
Sbjct 420 CAGACCATGTAAAAGATGCTCCGGACGAGTTGAAGAAAGTTATATCCAAGTTGTAA-TTC 478
Query 499 AAATTGTATCTATCT 513
||||||||||| |||
Sbjct 479 AAATTGTATCTCTCT 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23407471038
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5