BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48953.1
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916430 jgi|Araly1|916430|Al_scaffold_0008_1181 344 2e-94
> Ahg916430 jgi|Araly1|916430|Al_scaffold_0008_1181
Length=258
Score = 344 bits (186), Expect = 2e-94
Identities = 235/259 (91%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 1 ATGCAGAACCAGAAACATTCACATATACTGACTGCCATAACAATTGTTCTCTTGTTTGCG 60
||||| ||| ||||||| ||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1 ATGCAAAACAAGAAACAATCACATATATTCATTGCCATAACAATTGTTCTCTTGTTTGCG 60
Query 61 ATGGCCGCTAAAATAAACGCTATTGACGTTCATGACGCCATGTGTTATCGGTCCGAGTGT 120
||||| ||||||||||||||||||||||||||||||| | |||| |||||| ||||||
Sbjct 61 ATGGCATATAAAATAAACGCTATTGACGTTCATGACGCCGTTTGTTTTCGGTCAGAGTGT 120
Query 121 ACAAGCGTATGTGAT-CAGATTTGCTTAAGCCACGGGTATACAAATGGATGGTATTGTGG 179
||||||||||||||| | ||||||||||||| | || |||| ||||||||||||||||||
Sbjct 121 ACAAGCGTATGTGATAC-GATTTGCTTAAGCAAAGGCTATAAAAATGGATGGTATTGTGG 179
Query 180 AACATTTAGACTCCACACTGGATGTTGTTGTCTCAAGAAGAAAGAACTCAACCAAATAAT 239
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 180 AACATTTAGACTGCACACTGGATGTTGTTGTCTAAAAAAGAAAGAACTCAACCAAATAAT 239
Query 240 ATCTCCATCGAAAAACTAA 258
|| |||||| |||||||||
Sbjct 240 ATATCCATCAAAAAACTAA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8974241335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5