BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48970.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494960 jgi|Araly1|494960|fgenesh2_kg.8__776__AT5G48970.1 2130 0.0
> Ahg494960 jgi|Araly1|494960|fgenesh2_kg.8__776__AT5G48970.1
Length=1412
Score = 2130 bits (1153), Expect = 0.0
Identities = 1292/1357 (95%), Gaps = 17/1357 (1%)
Strand=Plus/Plus
Query 30 CTCTATCGGAGAGAACACGAACGTTGACGGAGAAAGAATCTCTCAGCTTCtttttttttt 89
||||||| | ||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 21 CTCTATC-G-GAGAACACGAACGTTGACGGAGAAAGAATCTCT---C-TC-AACTTTTTT 73
Query 90 tATAATCTTTTTCCGAGTCAAATCATTTTCAATCTCCACCCAACTCTCAAATCCGCGGCA 149
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 74 AATAATCTTTTTCCAAGTCAAATCATTTTCAATCTCCACCCAGCTCTCAAATCCGCGGCA 133
Query 150 AACGTTTAAGGGTCATCTCAAAGTTCCTTGCTTTTTCCCCGGAAACTCCATCAATGTCGA 209
|||||||||||||||||||||| || ||| |||||| |||||||| | ||||||||||||
Sbjct 134 AACGTTTAAGGGTCATCTCAAATTTGCTTACTTTTT-CCCGGAAAAT-CATCAATGTCGA 191
Query 210 CCCTTTTCGTTTCTCGCTTTATCTGCTTATAGAGACCAAAAACCCTAGAAAAATATGATT 269
|||||||||||||||||||||| ||||||||||| | ||||||||| |||||||||| |
Sbjct 192 GCCTTTTCGTTTCTCGCTTTATCAGCTTATAGAGA-CGAAAACCCTAAAAAAATATGAGT 250
Query 270 CCTACGACGGCGACGGTTGATGATGAGCCGGGACAGATTAAACGTGCTCTGATTGATGCT 329
|||||||||||||||| || || || |||||||||||||||||||| || |||||||||
Sbjct 251 CCTACGACGGCGACGG-TG--GAGGATCCGGGACAGATTAAACGTGCCCTCATTGATGCT 307
Query 330 TCTGCCGGAGCTATCTCTGGTGGTGTTTCTCGT-TCTGTAACTTCTCCTCTTGATGTCAT 388
||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 308 TCTGCCGGAGCTATCTCTGGTGGTGTTTCTCGTACCT-TTACTTCTCCTCTTGATGTCAT 366
Query 389 TAAGATTAGATTTCAGGTTCAGCTAGAACCGACGACTTCATGGGGTTTGGTTCGGGGAAA 448
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 367 TAAGATTAGATTTCAGGTTCAATTAGAACCGACGACTTCATGGGGTTTGGTTCGGGGTAA 426
Query 449 CTTGTCAGGAGCTTCTAAGTATACTGGAATGG-TACAGGCGACTAAAGATATATTTAGAG 507
|||||||||||| ||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 427 CTTGTCAGGAGCATCTAAGTATACTGGAATGGCT-CAGGCAACTAAAGATATATTTAGAG 485
Query 508 AAGAAGGTTTTCGGGGGTTTTGGCGGGGTAATGTGCCAGCTTTGCTCATGGTCATGCCGT 567
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 486 AAGAAGGTTTTCGGGGGTTTTGGCGGGGTAATGTGCCAGCTTTGCTTATGGTCATGCCAT 545
Query 568 ATACTTCAATTCAGTTTACAGTACTACATAAGCTGAAATCTTTTGCATCTGGTTCTACTA 627
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 546 ATACTTCAATTCAGTTTACAGTACTACATAAGCTGAAATCTTTTGCATCGGGTTCTACTA 605
Query 628 AAACAGAGGATCATATACATTTGAGCCCTTATCTATCCTTCGTCAGTGGAGCGTTAGCAG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AAACAGAGGATCATATACATTTGAGCCCTTATCTATCCTTCGTCAGTGGAGCGTTAGCAG 665
Query 688 GATGTGCTGCTACTCTAGGATCTTATCCTTTTGATCTTTTAAGGACAATATTGGCCTCAC 747
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 666 GATGTGCTGCTACTCTAGGATCTTATCCTTTTGATCTTCTAAGGACAATATTGGCTTCAC 725
Query 748 AAGGGGAGCCTAAGGTGTATCCAACAATGAGGTCTGCTTTTGTCGATATTATTCAGTCTC 807
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 726 AAGGGGAGCCTAAGGTGTATCCAACAATGAGGTCTGCGTTTGTTGATATTATTCAGTCTC 785
Query 808 GAGGTATAAGAGGATTGTATAATGGATTAACACCAACTCTTGTTGAGATTGTGCCTTACG 867
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GAGGCATAAGAGGATTGTATAATGGATTAACACCAACTCTTGTTGAGATTGTGCCTTACG 845
Query 868 CTGGCCTGCAATTTGGCACATATGATATGTTTAAGCGTTGGATGATGGACTGGAATCGAT 927
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 846 CTGGCCTGCAATTTGGCACGTATGATATGTTTAAGCGTTGGATGATGGACTGGAATCGAT 905
Query 928 ACAAATTATCCTCCAAAATCCCGATCAATGTGGACACCAACCTTTCTAGCTTCCAGCTTT 987
||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 906 ACATATTATCCTCCAAAAACCCGATCAACGTGGACACCAACCTTTCTAGCTTCCAGCTTT 965
Query 988 TCATTTGTGGGCTTGGGGCGGGCACTAGCGCCAAGCTCGTCTGCCATCCCCTTGATGTGG 1047
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 966 TTATTTGTGGGCTTGGGGCGGGCACTAGCGCCAAGCTCGTCTGCCATCCTCTTGATGTGG 1025
Query 1048 TCAAAAAACGATTCCAGATTGAAGGTTTACAGAGACATCCAAGATATGGAGCCCGAGTGG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TCAAAAAACGATTCCAGATTGAAGGTTTACAGAGACATCCAAGATATGGAGCCCGAGTGG 1085
Query 1108 AGCGACGTGCATACAGAAACATGTTAGACGGTCTTAGACAGATTATGATATCAGAAGGGT 1167
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1086 AGCGACGTGCATACAGAAACATGTTAGACGGTCTCAGACAGATTATGATATCAGAAGGGT 1145
Query 1168 GGCATGGTCTGTACAAAGGCATTGTGCCATCGACTGTGAAAGCTGCTCCTGCTGGTGCTG 1227
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GGCATGGGCTGTACAAAGGCATTGTGCCATCGACTGTGAAAGCTGCTCCTGCTGGTGCTG 1205
Query 1228 TAACCTTTGTGGCCTATGAGTTTACCTCCGATTGGTTGGAGTCAATTTCTTGGTAGAGAT 1287
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1206 TAACCTTTGTGGCCTATGAGTTTACCTCCGACTGGTTGGAATCAATTTCTTGGTAGAGAT 1265
Query 1288 TTTACTCTTTTGATACTTATATCTTACTGTCTCTAGCATTTATTATAGGCTCATATGAAC 1347
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1266 TTTACTCTTTTGATACTTATATCTTACTGTCTCTAGCATTTTTTATAGGCGCATATAAAC 1325
Query 1348 ATCGATCATTTTTGGAATGTAAACGTCAAAGTGTTGT 1384
|| ||||||||||||||||||||||||||||||||||
Sbjct 1326 ATTGATCATTTTTGGAATGTAAACGTCAAAGTGTTGT 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5