BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48980.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949356 jgi|Araly1|949356|scaffold_801243.1 1203 0.0
Ahg952063 jgi|Araly1|952063|scaffold_3400007.1 817 0.0
Ahg949357 jgi|Araly1|949357|scaffold_801244.1 608 3e-173
Ahg952061 jgi|Araly1|952061|scaffold_3400005.1 571 4e-162
Ahg357124 jgi|Araly1|357124|fgenesh1_pg.C_scaffold_8000911 459 3e-128
Ahg314877 jgi|Araly1|314877|fgenesh1_pm.C_scaffold_1003657 270 2e-71
Ahg948729 jgi|Araly1|948729|scaffold_800616.1 215 7e-55
> Ahg949356 jgi|Araly1|949356|scaffold_801243.1
Length=1196
Score = 1203 bits (651), Expect = 0.0
Identities = 999/1162 (86%), Gaps = 43/1162 (4%)
Strand=Plus/Plus
Query 74 TGGAAGAAGAAGAAGCTGTCGAACGATACGACTTCGAATCCGTCACTTCCATATGATGTA 133
||||||||| | |||| |||||| || | || ||||| |||||||||||||||||| |
Sbjct 42 TGGAAGAAGCATAAGCCGTCGAAATATCCCACCTCGAACCCGTCACTTCCATATGATTTG 101
Query 134 ATACTGATCATCTTAGCCCGCGTCTCGAGATCGTATTACACAAATCTCTCCTTAGTCTCC 193
||| ||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 102 ATAGTGAGCATATTAGCCCGCGTCTCGAGATCGTATTACCCAATTCTCTCCTTAGTCTCT 161
Query 194 AAAAGCTTCCGATCAATCCTTACTTCACCGGAGCTTTACAAAACCCGAACCCTCTTAGG- 252
|||| ||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 162 AAAATCTTCCGATCGATCCTTGCTTCACCGGAGCTTTACCAAACCGGAACCCTCTTAGGT 221
Query 253 CAAAACCGAGAATTTTCTCTATGTTTGCTTACGCTTCCCTGATGAAGCTAATCCTCGCTG 312
| || ||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 222 C-GAATCGAGACCTTTCTCTATGTTTGCTTACGCTTCCTTGATGAAGCTAACCCTGGCTG 280
Query 313 GTTCACTCTCTACAGGAAACCTAATCAAACCCTAACCGATCACACCACT---aagaag-a 368
||||| ||| ||| ||||| |||||||||||||||||||||| |||||| |||||| |
Sbjct 281 GTTCAATCTTTACCGGAAATCTAATCAAACCCTAACCGATCAAACCACTAAGAAGAAGAA 340
Query 369 -a-gaagaagaagaagaagaag--G-AGGAGAAGTCAAGTGTTAATCTGTTGGCTCCAAT 423
| ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 341 GACGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGTCAAGTGTTAATCTTTTGGCTCCAAT 400
Query 424 CTCAATTCTCAATTCTCATCCTGTGGAATGGTCAGCTATCATATCTGTTGATCATTATCT 483
|||| | | ||| |||| ||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 401 CTCAGTCCCCAACTCTCCTCCTGTGGAATGGTCAGCTATCATATCCGTTGGTCATAATCT 460
Query 484 CTACGCCATTAGTGCAGACATCGAAAAGGCTCCGTACTCTAACGTTCCTTACCTAGATTG 543
|||||||||| ||||||| |||||||||||||| ||||||||||| |||| || |||||
Sbjct 461 CTACGCCATTGGTGCAGATATCGAAAAGGCTCCTTACTCTAACGTCCCTTTTCTTGATTG 520
Query 544 TCGAACTCACACTTGGAATGAAGCTCCAAGAATGAGATTGGCTCACACTAATAGTGAATT 603
|||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||
Sbjct 521 TCGAACTCACACTTGGCATGAAGCTCCAAGAATGAGACTGGCTCACACTAGTAGTGTATT 580
Query 604 TGAAGGAATAGTGTATTTACCAGGAAGCTTTG-AAAGTCCA-GATTCTTTGAACTGTGTT 661
|||||||| | |||||||||||||||||| || |||| || ||||||||||||||||||
Sbjct 581 TGAAGGAAGAATGTATTTACCAGGAAGCTCTGAAAAG--CATGATTCTTTGAACTGTGTT 638
Query 662 GAAGTGTACAACACAATGACTCAGACTTGG-AAACCGGTGCCCCCCGAAAAACGGATGTT 720
||||| |||||||||| |||||| |||||| ||||||||||| |||||||||||||| ||
Sbjct 639 GAAGTTTACAACACAAAGACTCAAACTTGGAAAACCGGTGCCGCCCGAAAAACGGATATT 698
Query 721 CAAATTGGAAAATTTGGaaaaaaaGATTTACTACAAGAGCTTTCATTTAGACTCTAGGGC 780
| ||||||||||||||||| |||| |||||||||||| ||| |||||| ||| ||
Sbjct 699 CGAATTGGAAAATTTGGAAGGAAAGGTTTACTACAAGA-ATTTGATTTAGTGTCT---GC 754
Query 781 TGGGAAAGGTCT-ATCTTTGAGCTATAAATCGAAGCATTTGACATGTGGATTGGTAGTAT 839
|||||||||||| | ||||||||| ||| |||||| |||||||||| ||||||| | ||
Sbjct 755 TGGGAAAGGTCTGA-CTTTGAGCTCTAAGTCGAAGAATTTGACATGCGGATTGG-A-TA- 810
Query 840 TGGATACGGTGGAT-TCATATCTTCGCTCTTCTTGTATGATAGAGAATATAGCCTATTTT 898
||| | || || || || | |||||||||||||||||| ||| |||||| |
Sbjct 811 CAGAT----T-TATATC-GATATT---T-TTCTTGTATGATAGAGAACATAACCTATTGT 860
Query 899 TATCGTAAAGGAAATTTTATTTGGAGAGGACTTGACGGTAAGATA-CTGGTTTACGGGAA 957
||| | | ||||||||| |||||||| | |||| ||| ||| | ||| || |||
Sbjct 861 TATTGGGATGGAAATTTTGTTTGGAGAAAATTTGAGGGT---ATAGC-AGTTAAC-AGAA 915
Query 958 -AATAGAGGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAGTGTTCAATTGGCGG 1016
|| ||||| |||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 916 TGTTAAAGGGTATAGAAGGGCTACCTAAGTTTTCTAGATATTGTACTGTTAAATTGGCGG 975
Query 1017 AATATGGCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGG 1076
| |||||| | ||||||||| ||||||||||||||| |||| |||| |||||||||||||
Sbjct 976 AGTATGGCAGCAAGCTGGTGATTTTGTGGGACAAGTGTGTAGCTGCCAGTGGGTATAAGG 1035
Query 1077 AGAAGATGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGG 1136
||||||||||||||||||||||||||||||| |||| || ||| || ||||||||||||
Sbjct 1036 AGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATGCGCAACAGTGAAGAGATTTGGG 1095
Query 1137 GGAACGTTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTG 1196
|||| || |||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1096 GGAAGGTCGAGTGGTTCCATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGTGTG 1155
Query 1197 CTACTGCTGCTACTCTTTGATT 1218
||||||||||||||||||||||
Sbjct 1156 CTACTGCTGCTACTCTTTGATT 1177
> Ahg952063 jgi|Araly1|952063|scaffold_3400007.1
Length=1205
Score = 817 bits (442), Expect = 0.0
Identities = 920/1140 (81%), Gaps = 75/1140 (7%)
Strand=Plus/Plus
Query 102 CGACTTCGAATCCGTCACTTCCATATGATGTAATACTGATCATCTTAGCCCGCGTCTCGA 161
|||| || ||||| ||||||||| ||||| | || ||| ||||||||||||||||||||
Sbjct 98 CGACCTCAAATCCATCACTTCCAGATGATTTGGTAGTGAACATCTTAGCCCGCGTCTCGA 157
Query 162 GATCGTATTACACAAATCTCTCCTTAGTCTCCAAAAGCTTCCGATCAATCCTTACTTCAC 221
|||||||| || |||||||||||||||||| |||||||||||||| || ||| ||||||
Sbjct 158 GATCGTATCACCCAAATCTCTCCTTAGTCTGTAAAAGCTTCCGATCGATTCTTGCTTCAC 217
Query 222 CGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAAACCGAGAATTTTCTCTATGTTTGCT 281
||||||||||| | || ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 218 CGGAGCTTTACCAGACTCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGTGCT 277
Query 282 TACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCTACAGGAAACCTAATCAAA 341
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 278 TACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCTACCGGAAACCTAATC-AA 336
Query 342 CCCTAACCGATCACACCACTaagaagaagaagaagaagaagaagaagGAGGAGAAGTCAA 401
|||| | | ||||||||||||||||||||||||||||| | ||| | ||||
Sbjct 337 ----AACC--T---A--ACTAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAGAGGATTCAA 385
Query 402 GTGTTAATCTGTTGGCTCCAATCTCAATTCTCAATTCTCATCCTGTGGAATGGTC-A-GC 459
|||||||||| |||||||||| | |||||||||| |||| || ||| |||||| | | ||
Sbjct 386 GTGTTAATCTTTTGGCTCCAACCCCAATTCTCAACTCTCCTCATGTAGAATGGGCAAGGC 445
Query 460 TATCATAT-CTGTT-GATCATTATCTCTACGCCATTAGTGCAGACATCGAAAAGGCTCCG 517
|||| | ||||| | || | |||| |||||||||| |||| ||||||| | ||||
Sbjct 446 --TCAT-TGCTGTTGGTTC-TAATCTTTACGCCATTACCGCAGCCATCGAAGATTCTCCA 501
Query 518 TACTCTAACGTTCCTTACCTAGATTGTCGAACTCACACTTGGAATGAAGCTCCAAGAATG 577
| |||||| ||| ||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 502 TGCTCTAATGTTTGGTACCTTGACTGTCGAACTCACACTTGGCTTGAAGCTCCAAGAATG 561
Query 578 AG-ATTGGCTCACACTAATAGTGAATTTGA-AGGAATAGTGTATTTACCAGGAAGCTTTG 635
| ||| |||||||| ||||||||| |||| | |||| ||||| ||| | ||||||| ||
Sbjct 562 CGAATT-GCTCACACCAATAGTGAACTTGATAAGAAT-GTGTACTTAGCTGGAAGCTCTG 619
Query 636 AAAGTCCAGATTCTTTGAACTGTGTTGAAGTGTACAACACAATGACTCAGACTTGGAAAC 695
||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 620 AAAATCCATATTCTTTGAACTGTGTTGAAGTGTACAACACAAAGACTCAAACTTGGAATC 679
Query 696 CGGTGCC-CCCCGAAAAACGGATGTTCAAATT-GGAAAATTTGGaaaaaaaGATTTACTA 753
| ||||| |||| ||||||||| ||||| || ||||| | ||||| |||||||||| |
Sbjct 680 CCGTGCCGCCCC-AAAAACGGAAATTCAAGTTCGGAAA-TATGGAAGGAAAGATTTAC-A 736
Query 754 CAAGAGC-T-TTC-ATTTAGACTCTAGGGCTGGGAAAGGTCTATCTTTGAGCTATAAATC 810
| | | | ||| | ||| || || |||| ||| | | | ||| |||| |
Sbjct 737 TGA-ACCCTGTTCGAG--AGAATC-----CTAGGAA-GGT-TGT----G-GCTCTAAAGC 781
Query 811 GAA-GCATT-TGACATGTGGATT-GGTAGTATTGGATACGG-T--GGATTCATATCTTCG 864
|| | || ||||||| ||| ||||| || |||||||| | || |||| |||
Sbjct 782 CAAAGG-TTATGACATG-GGAAGCGGTAGGATGGGATACGGATTTGG-TTCAGGG-TTC- 836
Query 865 CTCTTCTTGTATGATAGAGAATATAGCCTATTTTTAT--CG-TAAAGGAAATTTTATTTG 921
| || | |||| |||||||| |||||||||| |||| | || | ||| |||| |||
Sbjct 837 -TATT-T-GTATAATAGAGAACATAGCCTATTGTTATGACCCTAGTGAAAAGTTTAGTTG 893
Query 922 GAGAGGACTTGACGGTAA-GATACTGGTTTACGG-GAAAAT-AGAGGGTTTAGAAGGGCT 978
|| | | || || | | || | | || || ||| || ||||||||||||||||||
Sbjct 894 GATAAAATTTAACACTGACGA-A--GATT---GGAGAAGATTAGAGGGTTTAGAAGGGCT 947
Query 979 ACCTAAGTTTTCTAGATATTCTAGTGTTCAATTGGCGGAATATGGCGGGAAGCTGGTGGT 1038
|||||||||| |||||||| || |||| |||| ||||| || || || |||||||| ||
Sbjct 948 ACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCGGATTACGGTGGTAAGCTGGTTGT 1007
Query 1039 TTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGATGATTTGGTGTGCAGA 1098
||| ||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||
Sbjct 1008 TTTTTGGGACAAGTATGTAGCTGCAACTGGTTATAAGGAGAAGATGATTTGGTGTGCAGA 1067
Query 1099 GATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGGAACGTTGAGTGGTTTGATGC 1158
||||||||| ||||| || ||| || |||||||||||||||| || |||||||| |||||
Sbjct 1068 GATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTGGGGGAAGGTCGAGTGGTTGGATGC 1127
Query 1159 TGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTGCTAC-TGCTGCTACTCTTTGAT 1217
|| |||||||||||||||||||| ||| || ||||||| | | ||||| || ||||||
Sbjct 1128 GGTTCTTACAGTCCCTAAGTCTTATAAATTCGTGTGTGCCAAAT-CTGCTTCTGTTTGAT 1186
> Ahg949357 jgi|Araly1|949357|scaffold_801244.1
Length=1202
Score = 608 bits (329), Expect = 3e-173
Identities = 553/657 (84%), Gaps = 32/657 (5%)
Strand=Plus/Plus
Query 102 CGACTTCGAATCCGTCACTTCCATATGATGTAATACTGATCATCTTAGCCCGCGTCTCGA 161
|||| || ||||| ||||||||| ||||| | || ||| ||||||||||||||||||||
Sbjct 98 CGACCTCAAATCCATCACTTCCAGATGATTTGGTAGTGAACATCTTAGCCCGCGTCTCGA 157
Query 162 GATCGTATTACACAAATCTCTCCTTAGTCTCCAAAAGCTTCCGATCAATCCTTACTTCAC 221
|||||||| || ||| |||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 158 GATCGTATCACCCAATTCTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTTCAC 217
Query 222 CGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAAACCGAGAATTTTCTCTATGTTTGCT 281
||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 218 CGGAGCTATACCAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGTGCT 277
Query 282 TACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCTACAGGAAACCTAATCAAA 341
||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 278 TACGCTTCCCTAATGAAGCTAACCCTCGCTGGTTCACTCTTTACCGGAAACCTAATCAAA 337
Query 342 CCCTAACCGATCACACCACTaagaagaagaagaagaagaagaagaagGAGGAGAAGTCAA 401
| || | | |||||||||||||||||||||||| | || || | | | ||||
Sbjct 338 --C---CC--T---A--ACTAAGAAGAAGAAGAAGAAGAAG-A-AA-GA-G-G-ATTCAA 379
Query 402 GTGTTAATCTGTTGGCTCCAATCTCAATTCTCAATTCTCATCCTGTGGAATGGTC-AGCT 460
||| ||||| ||||||||||| ||||||||||| |||| |||| |||||||||| || |
Sbjct 380 GTGGCAATCTTTTGGCTCCAATTTCAATTCTCAACTCTCCTCCTTTGGAATGGTCAAG-T 438
Query 461 ATCATATCTGTT-GATCATTATCTCTACGCCATTAGTGCAGACATCGAAAAGGCTCCGTA 519
|||| ||||| | || |||||| |||||||||| |||| |||||| | |||| |
Sbjct 439 CTCATCGCTGTTGGTTC-TTATCTTTACGCCATTACCGCAGCCATCGACGATTCTCCATG 497
Query 520 CTCTAACGTTCCTTACCTAGATTGTCGAACTCACACTTGGAATGAAGCTCCAAGAATGAG 579
|||||||||| ||||| || |||||||||||||||||| ||| ||||||||||| |
Sbjct 498 CTCTAACGTTTGGTACCTTGACTGTCGAACTCACACTTGGCTTGATTCTCCAAGAATGCG 557
Query 580 -ATTGGCTCACACTAATAGTGAATTTGA-AGGAATAGTGTATTTACCAGGAAGCTTTGAA 637
||| ||||||||| ||| | || ||| ||||| ||||||||| ||| ||||| ||||
Sbjct 558 AATT-GCTCACACTGATACTCCATATGATGGGAAT-GTGTATTTAGCAGAAAGCTCTGAA 615
Query 638 AGTCCAGATTCTTTGAACTGTGTTGAAGTGTACAACACA-ATGACTCA-GACTTGGAAAC 695
||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||| |
Sbjct 616 AGTCCAGATTCTTTGAACTGTGTTGAAGTGTACAACACAGA-GACTCAAG-CTTGGAATC 673
Query 696 CGGTGCCCCCCGAAAA-ACGGATGTTCAAATTGGAAAATTTGGaaaaaaaGATTTAC 751
| ||||| ||| |||| |||||| ||| |||| |||||||||||| || |||||||
Sbjct 674 CTGTGCCGCCC-AAAAGACGGATATTCGAATTAGAAAATTTGGAAGGAACGATTTAC 729
Score = 209 bits (113), Expect = 3e-53
Identities = 214/262 (82%), Gaps = 10/262 (4%)
Strand=Plus/Plus
Query 960 TAGAGGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAGTGTTCA-ATTGGCGGAA 1018
|||| |||||||||||| ||||| ||||| |||| | | || |||| | ||| || ||
Sbjct 926 TAGAAGGTTTAGAAGGGTTACCTCAGTTTGCTAGTTCTAGTACTGTT-ATATTAGCAGAT 984
Query 1019 TATGGCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGA-GTGGGTATAAGGA 1077
||||| || |||||||| ||||||||||| ||||||| | | | || ||| |||||| |
Sbjct 985 TATGGTGGTAAGCTGGTAGTTTTGTGGGATAAGTATG-AGCAGGGATTTGGATATAAGAA 1043
Query 1078 GAAGATGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGG 1137
||||||||||||||||||||||||||| || |||||||| ||| | |||||||||||||
Sbjct 1044 GAAGATGATTTGGTGTGCAGAGATTTCACTTGAAAAACGCAACACTGAAGAGATTTGGGG 1103
Query 1138 GAACGTTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGT-- 1195
||| || |||||||| ||||| || |||||||||||||||||||| || | ||||||
Sbjct 1104 GAAGGTCGAGTGGTTGGATGCGGTTCTTACAGTCCCTAAGTCTTATAAG-T-TTGTGTAT 1161
Query 1196 GCTAC-TGCTGCTACTCTTTGA 1216
|||| | ||| |||| |||||
Sbjct 1162 GCTAAAT-CTGTTACTGTTTGA 1182
> Ahg952061 jgi|Araly1|952061|scaffold_3400005.1
Length=1273
Score = 571 bits (309), Expect = 4e-162
Identities = 499/587 (85%), Gaps = 28/587 (5%)
Strand=Plus/Plus
Query 25 TTCCCAAAGGTTGTCCACCGCTTCCGGCGTCAAGGACGGCCAACCACCATGGAAGAAGAA 84
||| |||| || |||||||||||| | | ||| ||||||||||||||| |||||||||||
Sbjct 14 TTCACAAATGTCGTCCACCGCTTCAGCCTTCACGGACGGCCAACCACCGTGGAAGAAGAA 73
Query 85 GAAGCTGTCGAACGATACGACTTCGAATCCGT-CACTTCCATATGATGTAATACTGATCA 143
||||| |||||| ||| ||||| |||| |||| || ||||||||||| | ||| ||| ||
Sbjct 74 GAAGCCGTCGAAAGATCCGACTCCGAACCCGTCCA-TTCCATATGATTTGATAGTGAGCA 132
Query 144 TCTTAGCCCGCGTCTCGAGATCGTATTACACAAATCTCTCCTTAGTCTCCAAAAGCTTCC 203
| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 133 TATTAGCCCGTGTCTCGAGATCGTATTACCCAAAACTCTCCTTAGTCTCCAAAAGCTTCC 192
Query 204 GATCAATCCTTACTTCACCGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAAACCGAGA 263
|||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 193 GATCGATCCTTGCTTCACCGGAGCTATACCAAACCCGAACCCTCTTAGGCAAAACCGAGA 252
Query 264 ATTTTCTCTATGTTTGCTTACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCT 323
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 253 CTTTTCTCTACGTTTGCTTACGCTTCCCTGATGAAGCTAACCCTCGCTGGTTCACTCTTT 312
Query 324 AC-AGGAAACCTAATCAAACCCTAACCGATCACACCACTaagaagaagaagaagaagaag 382
|| || |||||||||||||||||||| | | | |||||||||||||||||||
Sbjct 313 ACCAG-AAACCTAATCAAACCCTAAC---T-A-A-------GAAGAAGAAGAAGAAGAAG 359
Query 383 aagaagGAGGAGAAGTCAAGTGTTAATCTGTTGGCTCCAATCTCAATTCTCAATTCTCAT 442
|| | | ||||| ||||||||||| || |||||||||| | || |||||||||||| |
Sbjct 360 AA-A-G-AGGAG---TCAAGTGTTAAACTTTTGGCTCCAACCCCAGTTCTCAATTCTCCT 413
Query 443 CCTGTGGAATGGTCA-GCTATCATATCTGTTGAT-CATTATCTCTACGCCATTAGTGCAG 500
||| ||||||||||| | | |||| |||||| | | | |||| |||||||||| ||||
Sbjct 414 CCTTTGGAATGGTCAAG-TCTCATCGCTGTTGGTTC-TAATCTTTACGCCATTACCGCAG 471
Query 501 ACATCGAAAAGGCTCCGTACTCTAACGTTCCTTACCTAGATTGTCGAACTCACACTTGGA 560
|||||| | |||| | |||||||||| ||||| || ||||||||||| ||||||
Sbjct 472 CCATCGACGATTCTCCATGCTCTAACGTTTGGTACCTTGACTGTCGAACTCATACTTGGC 531
Query 561 ATGAAGCTCCAAGAATGAGATTGGCTCACACTAATAGTGAA-TTTGA 606
|||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 532 TTGAAGCTCCAAGAATGAGATTGGCTCACACCAATAGT-AAGTTTGA 577
Score = 296 bits (160), Expect = 3e-79
Identities = 215/242 (89%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 964 GGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAG-TGTTCAATTGGCGGAATATG 1022
|||||||||| |||| ||||||||| ||| ||| | | |||| |||| ||||| ||||
Sbjct 839 GGGTTTAGAAAGGCTGCCTAAGTTTGCTAAATACAGT-GCTGTTAAATTAGCGGATTATG 897
Query 1023 GCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGA 1082
| || |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 898 GTGGTAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATAAGGAGAAGA 957
Query 1083 TGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGGAACG 1142
||||||||||||||||||||||||| ||||| || ||| | |||||||||||||||| |
Sbjct 958 TGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAATGAAGAGATTTGGGGGAAGG 1017
Query 1143 TTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTGCTACTG 1202
| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 TCGAGTGGTTTGATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGTGTGCTACTG 1077
Query 1203 CT 1204
||
Sbjct 1078 CT 1079
Score = 193 bits (104), Expect = 3e-48
Identities = 129/141 (91%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 968 TTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAGTGTTCA-ATTGGCGGAATATGGCGG 1026
|||||||||||||||||||||||||| |||| || |||| | ||||||||| | ||||||
Sbjct 1131 TTAGAAGGGCTACCTAAGTTTTCTAGTTATTGTACTGTT-AGATTGGCGGAGTGTGGCGG 1189
Query 1027 GAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGATGAT 1086
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1190 CAAGCTGGTCGTTTTGTGGGACAAGTATGTGCCTGCGAGTGGGTATAAGGAGAAGATGAT 1249
Query 1087 TTGGTGTGCAGAGATTTCGCT 1107
||| ||||| |||||||||||
Sbjct 1250 TTGATGTGCGGAGATTTCGCT 1270
> Ahg357124 jgi|Araly1|357124|fgenesh1_pg.C_scaffold_8000911
Length=2640
Score = 459 bits (248), Expect = 3e-128
Identities = 405/477 (85%), Gaps = 26/477 (5%)
Strand=Plus/Plus
Query 54 TCAAGGACGGCCAACCACCATGGAAGAAGAAGAAGCTGTCGAACGATACGACTTCGAATC 113
||| ||||||||||||||| |||||||||||||||| |||||| ||| ||||| |||| |
Sbjct 1586 TCACGGACGGCCAACCACCGTGGAAGAAGAAGAAGCCGTCGAAAGATCCGACTCCGAACC 1645
Query 114 CGT-CACTTCCATATGATGTAATACTGATCATCTTAGCCCGCGTCTCGAGATCGTATTAC 172
||| || ||||||||||| | ||| ||| ||| |||||||| ||||||||||||||||||
Sbjct 1646 CGTCCA-TTCCATATGATTTGATAGTGAGCATATTAGCCCGTGTCTCGAGATCGTATTAC 1704
Query 173 ACAAATCTCTCCTTAGTCTCCAAAAGCTTCCGATCAATCCTTACTTCACCGGAGCTTTAC 232
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 1705 CCAAAACTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTTCACCGGAGCTATAC 1764
Query 233 AAAACCCGAACCCTCTTAGGCAAAACCGAGAATTTTCTCTATGTTTGCTTACGCTTCCCT 292
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1765 CAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTACGTTTGCTTACGCTTCCCT 1824
Query 293 GATGAAGCTAATCCTCGCTGGTTCACTCTCTAC-AGGAAACCTAATCAAACCCTAACCGA 351
||||||||||| ||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 1825 GATGAAGCTAACCCTCGCTGGTTCACTCTTTACCAG-AAACCTAATCAAACCCTAAC--- 1880
Query 352 TCACACCACTaagaagaagaagaagaagaagaagaagGAGGAGAAGTCAAGTGTTAATCT 411
| | | ||||||||||||||||||||| | | ||||| |||| |||||| ||
Sbjct 1881 T-A-A-------GAAGAAGAAGAAGAAGAAGAA-A-G-AGGAG---TCAACTGTTAAACT 1925
Query 412 GTTGGCTCCAATCTCAATTCTCAATTCTCATCCTGTGGAATGGTCA-GCTATCATATCTG 470
|||||||||| | || |||||||||||| |||| ||||||||||| | | |||| |||
Sbjct 1926 TTTGGCTCCAACCCCAGTTCTCAATTCTCCTCCTTTGGAATGGTCAAG-TCTCATCGCTG 1984
Query 471 TTGAT-CATTATCTCTACGCCATTAGTGCAGACATCGAAAAGGCTCCGTACTCTAAC 526
||| | | | |||| |||||||||| |||| |||||| | |||| | |||||||
Sbjct 1985 TTGGTTC-TAATCTTTACGCCATTACCGCAGCCATCGACGATTCTCCATGCTCTAAC 2040
Score = 318 bits (172), Expect = 5e-86
Identities = 227/254 (89%), Gaps = 2/254 (1%)
Strand=Plus/Plus
Query 964 GGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAG-TGTTCAATTGGCGGAATATG 1022
|||||||||| |||| ||||||||| ||| ||| | | |||| |||| ||||| ||||
Sbjct 2388 GGGTTTAGAAAGGCTGCCTAAGTTTGCTAAATACAGT-GCTGTTAAATTAGCGGATTATG 2446
Query 1023 GCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGA 1082
| || |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 2447 GTGGTAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATAAGGAGAAGA 2506
Query 1083 TGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGGAACG 1142
||||||||||||||||||||||||| ||||| || ||| | |||||||||||||||| |
Sbjct 2507 TGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAATGAAGAGATTTGGGGGAAGG 2566
Query 1143 TTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTGCTACTG 1202
| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2567 TCGAGTGGTTTGATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGTGTGCTACTG 2626
Query 1203 CTGCTACTCTTTGA 1216
||||||||||||||
Sbjct 2627 CTGCTACTCTTTGA 2640
> Ahg314877 jgi|Araly1|314877|fgenesh1_pm.C_scaffold_1003657
Length=1101
Score = 270 bits (146), Expect = 2e-71
Identities = 222/259 (86%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 960 TAGAGGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAGTGTTCA-ATTGGCGGAA 1018
||| |||||||||||||||||| |||||| |||| |||| || |||| | |||||||||
Sbjct 845 TAGCGGGTTTAGAAGGGCTACCGAAGTTTGCTAGTTATTGTACTGTT-AGATTGGCGGAT 903
Query 1019 TATGGCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAG 1078
|| || || ||| |||||||||| ||||| |||||||| ||||| |||||||||||| ||
Sbjct 904 TACGGTGGTAAGTTGGTGGTTTTTTGGGATAAGTATGTGCCTGCTAGTGGGTATAAGAAG 963
Query 1079 AAGATGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGG 1138
||||||||||||||||||||||||||||| |||| || | ||| ||||||||| ||||
Sbjct 964 AAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATTCGCAGTGGTGAAGAGATTTCGGGG 1023
Query 1139 AACGTTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTGCT 1198
|| || |||||||||||| | ||||||||||| ||||||||||| ||| || || |||||
Sbjct 1024 AAGGTCGAGTGGTTTGATTCAGTGCTTACAGTTCCTAAGTCTTATAAATTCGTGAGTGCT 1083
Query 1199 A-CTGCTGCTACTCTTTGA 1216
| | |||||||||||||||
Sbjct 1084 ATC-GCTGCTACTCTTTGA 1101
> Ahg948729 jgi|Araly1|948729|scaffold_800616.1
Length=1015
Score = 215 bits (116), Expect = 7e-55
Identities = 220/269 (82%), Gaps = 11/269 (4%)
Strand=Plus/Plus
Query 965 GGTTTAGAAGGGCTACCTAAGTTT-TCTAGATATTCTAGTGTTCAATTGGCGGAATATGG 1023
||||| ||||| || ||||| ||| | || ||| | ||||| || |||| || |||||
Sbjct 742 GGTTTGGAAGGACTGCCTAAATTTGT-TACTTATAGTCGTGTTAAACTGGCAGATTATGG 800
Query 1024 CGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGAT 1083
|| || ||| ||||||||||||||||||| |||||| |||||||||| ||| |||||
Sbjct 801 TGGAAATATGGCAGTTTTGTGGGACAAGTATGCACCTGCAAGTGGGTATATGGATAAGAT 860
Query 1084 GATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGGAACGT 1143
|||||||||||||||||||||||| |||| || ||| || |||||||||||||||| ||
Sbjct 861 GATTTGGTGTGCAGAGATTTCGCTTGAAAGGCGAAACAGTGAAGAGATTTGGGGGAAGGT 920
Query 1144 TGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTG--TGCTACT 1201
||||||||||||||||||||| |||||| |||||||| || | ||||| || | ||
Sbjct 921 CAAGTGGTTTGATGCTGTGCTTAAAGTCCCCAAGTCTTATGAA-T-TTGTGCATGAT-CT 977
Query 1202 -GCTGCTACTCTTTGATTCGA-TGACTCG 1228
||||||||| |||||| || |||||||
Sbjct 978 TGCTGCTACTGTTTGAT--GAATGACTCG 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5