BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48990.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952063 jgi|Araly1|952063|scaffold_3400007.1 1304 0.0
Ahg949357 jgi|Araly1|949357|scaffold_801244.1 957 0.0
Ahg952061 jgi|Araly1|952061|scaffold_3400005.1 556 1e-157
Ahg357124 jgi|Araly1|357124|fgenesh1_pg.C_scaffold_8000911 516 2e-145
Ahg319889 jgi|Araly1|319889|fgenesh1_pm.C_scaffold_3002905 411 9e-114
Ahg949356 jgi|Araly1|949356|scaffold_801243.1 351 6e-96
Ahg314877 jgi|Araly1|314877|fgenesh1_pm.C_scaffold_1003657 289 4e-77
Ahg948729 jgi|Araly1|948729|scaffold_800616.1 252 6e-66
Ahg331398 jgi|Araly1|331398|fgenesh1_pm.C_scaffold_8000741 113 3e-24
> Ahg952063 jgi|Araly1|952063|scaffold_3400007.1
Length=1205
Score = 1304 bits (706), Expect = 0.0
Identities = 977/1104 (88%), Gaps = 33/1104 (3%)
Strand=Plus/Plus
Query 89 AATCGTCCCCAAATCCGTCACTTCCAGAAGATTTGATAGTGAGCATCTTAGCCCGCGTCT 148
||||| || ||||||| ||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 95 AATCGACCTCAAATCCATCACTTCCAGATGATTTGGTAGTGAACATCTTAGCCCGCGTCT 154
Query 149 CGAGATCGTATTACACAAATCTCTCCGTAGTCTCAAAAACCTTCCGATCAATCCTTACTT 208
||||||||||| || ||||||||||| |||||| |||| ||||||||| || ||| |||
Sbjct 155 CGAGATCGTATCACCCAAATCTCTCCTTAGTCTGTAAAAGCTTCCGATCGATTCTTGCTT 214
Query 209 CACCGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAACCCGAGACTTTTCTCTATGTCT 268
|||||||||||||| | || |||||||||||||||||| ||||||||||||||||||| |
Sbjct 215 CACCGGAGCTTTACCAGACTCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGT 274
Query 269 GCCTACGCTTCCCTGATGAAGCTAATCCTCGTTGGTTGATTCTCTACCGGAAGCCTAATC 328
|| |||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||
Sbjct 275 GCTTACGCTTCCCTGATGAAGCTAATCCTCGCTGGTTCACTCTCTACCGGAAACCTAATC 334
Query 329 AAACCCTAACT---------aagaagaagaagaag---aaagaGGATTCAAGTGTTCATC 376
||| ||||||| ||||||||||||||| |||||||||||||||||| |||
Sbjct 335 AAAACCTAACTAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAGAGGATTCAAGTGTTAATC 394
Query 377 TTTTGGCTCCAATTCCAATTCTCAATTCTCCAAC-TGTGGAATGGTCAAGTCT-AGTCGC 434
|||||||||||| ||||||||||| ||||| | ||| |||||| |||| || | | ||
Sbjct 395 TTTTGGCTCCAACCCCAATTCTCAACTCTCC-TCATGTAGAATGGGCAAGGCTCA-TTGC 452
Query 435 TGTTGGTTCTTATCTGTACGCCATTACCGCAGACATCAAAGATTCTCCATGCTCTAACGT 494
|||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 453 TGTTGGTTCTAATCTTTACGCCATTACCGCAGCCATCGAAGATTCTCCATGCTCTAATGT 512
Query 495 TTGGTACCTTGACTGTCGAACGCACACTTGGCTTGATTCTCCAAGATTGCGACTGGCTCA 554
||||||||||||||||||||| |||||||||||||| |||||||| ||||| | |||||
Sbjct 513 TTGGTACCTTGACTGTCGAACTCACACTTGGCTTGAAGCTCCAAGAATGCGAATTGCTCA 572
Query 555 CATCAATAGTG-ACTTTAAT-GGGAGGACGTATTTCCCAGGAAGCTCTGAAAAGCCAGAT 612
|| |||||||| || || || | | | ||| || | |||||||||||||| ||| ||
Sbjct 573 CACCAATAGTGAAC-TTGATAAGAATG-TGTACTTAGCTGGAAGCTCTGAAAATCCATAT 630
Query 613 TCTTTGAACTGTGTTGAAGTGTACAACACAAATACTCAGACTTGGAATCCCGTGCCTCCC 672
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 631 TCTTTGAACTGTGTTGAAGTGTACAACACAAAGACTCAAACTTGGAATCCCGTGCCGCCC 690
Query 673 CAAAAACGAAAACTCAAATTCGGAAATATGGAAGGAAAGATTTACAT-ACCCCCTTG-TC 730
|||||||| ||| |||| ||||||||||||||||||||||||||||| | ||| || ||
Sbjct 691 CAAAAACGGAAATTCAAGTTCGGAAATATGGAAGGAAAGATTTACATGA-ACCC-TGTTC 748
Query 731 AAGAGAATCATAGGAAGGCTGTGGCTCTAAACCCAAAGGTTTTGACATGGGAAGCGGTAG 790
|||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 749 GAGAGAATCCTAGGAAGGTTGTGGCTCTAAAGCCAAAGGTTATGACATGGGAAGCGGTAG 808
Query 791 GATTGGG-TACGAATTTGGAT-AGGGGTTCTTTTTGTATGATAGGGAACATAGCCTATTG 848
|| |||| |||| |||||| | | ||||||| ||||||| |||| |||||||||||||||
Sbjct 809 GA-TGGGATACGGATTTGGTTCA-GGGTTCTATTTGTATAATAGAGAACATAGCCTATTG 866
Query 849 TTATGACCCTAGTGGGAAGTTTAGATGGAT-GAATTGTAACACTGCGGAAGGAGACTGGA 907
|||||||||||||| |||||||| ||||| |||| ||||||| || | ||| ||||
Sbjct 867 TTATGACCCTAGTGAAAAGTTTAGTTGGATAAAATT-TAACACT---GACGAAGATTGGA 922
Query 908 GCAGATTAGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAG 967
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GAAGATTAGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAG 982
Query 968 CGGAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATA 1027
|||| || || || |||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct 983 CGGATTACGGTGGTAAGCTGGTTGTTTTTTGGGACAAGTATGTAGCTGCAACTGGTTATA 1042
Query 1028 AGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTT 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 AGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTT 1102
Query 1088 GGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCT 1147
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1103 GGGGGAAGGTCGAGTGGTTGGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTGT 1162
Query 1148 GTGCTAAATCTGCTACTGTTTGAT 1171
|||| ||||||||| |||||||||
Sbjct 1163 GTGCCAAATCTGCTTCTGTTTGAT 1186
> Ahg949357 jgi|Araly1|949357|scaffold_801244.1
Length=1202
Score = 957 bits (518), Expect = 0.0
Identities = 919/1108 (83%), Gaps = 46/1108 (4%)
Strand=Plus/Plus
Query 89 AATCGTCCCCAAATCCGTCACTTCCAGAAGATTTGATAGTGAGCATCTTAGCCCGCGTCT 148
||||| || ||||||| ||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 95 AATCGACCTCAAATCCATCACTTCCAGATGATTTGGTAGTGAACATCTTAGCCCGCGTCT 154
Query 149 CGAGATCGTATTACACAAATCTCTCCGTAGTCTCAAAAACCTTCCGATCAATCCTTACTT 208
||||||||||| || ||| ||||||| ||||||| |||| ||||||||| |||||| |||
Sbjct 155 CGAGATCGTATCACCCAATTCTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTT 214
Query 209 CACCGGAGCTTTACAAAACCCGAACCCTCTTAGGCAAACCCGAGACTTTTCTCTATGTCT 268
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 215 CACCGGAGCTATACCAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTATGTGT 274
Query 269 GCCTACGCTTCCCTGATGAAGCTAATCCTCGTTGGTTGATTCTCTACCGGAAGCCTAATC 328
|| ||||||||||| |||||||||| ||||| ||||| | ||| |||||||| |||||||
Sbjct 275 GCTTACGCTTCCCTAATGAAGCTAACCCTCGCTGGTTCACTCTTTACCGGAAACCTAATC 334
Query 329 AAACCCTAACT------aagaagaagaagaagaaagaGGATTCAAGTGTTC-ATCTTTTG 381
||||||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 335 AAACCCTAACTAAGAAGAAGAAGAAGAAGAAGAAAGAGGATTCAAGTG-GCAATCTTTTG 393
Query 382 GCTCCAATTCCAATTCTCAATTCTCCAACTGTGGAATGGTCAAGTCT-AGTCGCTGTTGG 440
||||||||| |||||||||| ||||| || |||||||||||||||| | ||||||||||
Sbjct 394 GCTCCAATTTCAATTCTCAACTCTCCTCCTTTGGAATGGTCAAGTCTCA-TCGCTGTTGG 452
Query 441 TTCTTATCTGTACGCCATTACCGCAGACATCAAAGATTCTCCATGCTCTAACGTTTGGTA 500
||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 453 TTCTTATCTTTACGCCATTACCGCAGCCATCGACGATTCTCCATGCTCTAACGTTTGGTA 512
Query 501 CCTTGACTGTCGAACGCACACTTGGCTTGATTCTCCAAGATTGCGACTGGCTCACA-TCA 559
||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||| | |
Sbjct 513 CCTTGACTGTCGAACTCACACTTGGCTTGATTCTCCAAGAATGCGAATTGCTCACACTGA 572
Query 560 ATAGTGACTT-TAATGGGAG-GACGTATTTCCCAGGAAGCTCTGAAAAG-CCAGATTCTT 616
|| | | | | |||||| | |||||| ||| ||||||||||| | ||||||||||
Sbjct 573 -TACTC-CATATGATGGGAATGT-GTATTTAGCAGAAAGCTCTGAAA-GTCCAGATTCTT 628
Query 617 TGAACTGTGTTGAAGTGTACAACACAAATACTCA-GACTTGGAATCCCGTGCCTCCCCAA 675
|||||||||||||||||||||||||| | ||||| | |||||||||| ||||| ||| ||
Sbjct 629 TGAACTGTGTTGAAGTGTACAACACAGAGACTCAAG-CTTGGAATCCTGTGCCGCCC-AA 686
Query 676 AA-ACGAAAACTCAAATTCGGAAATATGGAAGGAAAGATTTACAT-ACCCC-CTTGTCAA 732
|| ||| | | || |||| | |||| ||||||||| ||||||||| | || | || ||
Sbjct 687 AAGACGGATATTCGAATTAGAAAATTTGGAAGGAACGATTTACATGAACCTTCAAGT-AA 745
Query 733 GAGAATCATAGGAAGGCTGTGGCTCTAAACCCAAAGGTTTTGACATGGGAAGCGGTAGGA 792
| || | || ||||| |||| | || |||||||||| |||| | ||| |||||||
Sbjct 746 T-GTCTCCTTGGCAGGCTACGGCTTTTAAGCCAAAGGTTTCGACAAGTGAATTGGTAGGA 804
Query 793 TTGGGTACGAATTTGGATAGGGGTTCTTTTTGTATGATAGGGAACA-TAGCCTATTGTTA 851
||| || || ||||| | ||| ||||| ||||| ||| | || | ||| |||| |||
Sbjct 805 TTGCATATGATTTTGGGTCGGGTTTCTTATTGTACGATTGATAA-AGTAGACTATCATTA 863
Query 852 TGACCCT-AGTGGGAAGTTTAGATGGATG-AATTGTAACACTGCG-GAAGGAG-A-CTGG 906
|| |||| | | | | ||| || || | | ||| || | ||| | | |
Sbjct 864 TGCCCCTCATT---A--TCCCCCTGG-TGTAAATCTTACA-TG-GAGAACAAATAACACT 915
Query 907 AGCAGA-TT--AGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAA 963
| || || ||| |||||||||||| ||||| |||||||||| | ||||||||||| |
Sbjct 916 TCCGGAATTTTAGAAGGTTTAGAAGGGTTACCTCAGTTTGCTAGTTCTAGTACTGTTATA 975
Query 964 TTAGCGGAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGG 1023
||||| || ||||| || |||||||| ||||||||||| ||||||| ||| | | | ||
Sbjct 976 TTAGCAGATTATGGTGGTAAGCTGGTAGTTTTGTGGGATAAGTATG-AGCAGGGATTTGG 1034
Query 1024 -TATAAGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGA 1082
|||||| |||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 1035 ATATAAGAAGAAGATGATTTGGTGTGCAGAGATTTCACTTGAAAAACGCAACACTGAAGA 1094
Query 1083 GATTTGGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATT 1142
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1095 GATTTGGGGGAAGGTCGAGTGGTTGGATGCGGTTCTTACAGTCCCTAAGTCTTATAAGTT 1154
Query 1143 CGTCTGTGCTAAATCTGCTACTGTTTGA 1170
|| | ||||||||||| ||||||||||
Sbjct 1155 TGTGTATGCTAAATCTGTTACTGTTTGA 1182
> Ahg952061 jgi|Araly1|952061|scaffold_3400005.1
Length=1273
Score = 556 bits (301), Expect = 1e-157
Identities = 424/483 (88%), Gaps = 10/483 (2%)
Strand=Plus/Plus
Query 103 CCGT-CACTTCCAGAAGATTTGATAGTGAGCATCTTAGCCCGCGTCTCGAGATCGTATTA 161
|||| || ||||| | ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 102 CCGTCCA-TTCCATATGATTTGATAGTGAGCATATTAGCCCGTGTCTCGAGATCGTATTA 160
Query 162 CACAAATCTCTCCGTAGTCTCAAAAACCTTCCGATCAATCCTTACTTCACCGGAGCTTTA 221
| |||| |||||| ||||||| |||| ||||||||| |||||| ||||||||||||| ||
Sbjct 161 CCCAAAACTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTTCACCGGAGCTATA 220
Query 222 CAAAACCCGAACCCTCTTAGGCAAACCCGAGACTTTTCTCTATGTCTGCCTACGCTTCCC 281
| ||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||
Sbjct 221 CCAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTACGTTTGCTTACGCTTCCC 280
Query 282 TGATGAAGCTAATCCTCGTTGGTTGATTCTCTACCGGAAGCCTAATCAAACCCTAACT-- 339
|||||||||||| ||||| ||||| | ||| |||| ||| ||||||||||||||||||
Sbjct 281 TGATGAAGCTAACCCTCGCTGGTTCACTCTTTACCAGAAACCTAATCAAACCCTAACTAA 340
Query 340 ----aagaagaagaagaagaaagaGGATTCAAGTGTTCATCTTTTGGCTCCAATTCCAAT 395
||||||||||||||||||||||| ||||||||| | ||||||||||||| ||| |
Sbjct 341 GAAGAAGAAGAAGAAGAAGAAAGAGGAGTCAAGTGTTAAACTTTTGGCTCCAACCCCAGT 400
Query 396 TCTCAATTCTCCAACTGTGGAATGGTCAAGTCT-AGTCGCTGTTGGTTCTTATCTGTACG 454
|||||||||||| || |||||||||||||||| | |||||||||||||| |||| ||||
Sbjct 401 TCTCAATTCTCCTCCTTTGGAATGGTCAAGTCTCA-TCGCTGTTGGTTCTAATCTTTACG 459
Query 455 CCATTACCGCAGACATCAAAGATTCTCCATGCTCTAACGTTTGGTACCTTGACTGTCGAA 514
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CCATTACCGCAGCCATCGACGATTCTCCATGCTCTAACGTTTGGTACCTTGACTGTCGAA 519
Query 515 CGCACACTTGGCTTGATTCTCCAAGATTGCGACTGGCTCACATCAATAGTGACTTTAATG 574
| || ||||||||||| |||||||| || || ||||||||| ||||||| | ||| |||
Sbjct 520 CTCATACTTGGCTTGAAGCTCCAAGAATGAGATTGGCTCACACCAATAGTAAGTTTGATG 579
Query 575 GGA 577
|||
Sbjct 580 GGA 582
Score = 403 bits (218), Expect = 2e-111
Identities = 410/498 (82%), Gaps = 32/498 (6%)
Strand=Plus/Plus
Query 671 CCCA-AAAACGAAAACTCAAATTCGG-AAATATGGAAGGAAAGATTTACAT-ACCCCCTT 727
|||| || ||| | | ||||||| || |||||||||||||||||||||| | | | ||
Sbjct 594 CCCAGAAGACGGATATTCAAATT-GGAAAATATGGAAGGAAAGATTTACGTGA-ACGTTT 651
Query 728 GTCAAGAGAATC-A-T-AGGAAGGCTGTGGC-TCTAAAC-CCAAAGGTTTTGACATGGGA 782
|| |||| || | | ||| ||| ||| || | | ||| |||||| || ||||||||||
Sbjct 652 GTGTAGAG--TCTACTAAGG-AGGTTGT-GCTTGT-AACGCCAAAGATTATGACATGGGA 706
Query 783 AGCGGTAGGATTGGGTACGAATTTGGATAGGGGTTCTTTTTGTATGATAGGGAACATAGC 842
|||| || ||| | | |||||||| |||||||| |||||| ||||| ||| |||
Sbjct 707 AGCGTTA-AATT---T--GGATTTGGATCGGGGTTCTCTTTGTACGATAGATAACGTAGT 760
Query 843 CTAT-TGTTATGACCCTAGTGG-GAAGTTTAGATGGATG-AATTGTAACACTGCGGAAG- 898
|||| | |||| |||||||||| | | ||| || | | || || || | |||||
Sbjct 761 CTATCT-TTATAACCCTAGTGGAGTA-TTTCTATTTA-GAAAAAGTTTCATTAAGGAAGC 817
Query 899 -G-AGACTGGAGCAGATTA-GAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTA 955
| || ||||| | |||| | |||||||||| |||| ||||||||||||| ||| |||
Sbjct 818 AGTAGTTTGGAGAATATTACG-GGGTTTAGAAAGGCTGCCTAAGTTTGCTAAATACAGTG 876
Query 956 CTGTTAAATTAGCGGAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTG 1015
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 877 CTGTTAAATTAGCGGATTATGGTGGTAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTG 936
Query 1016 CAAGTGGGTATAAGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CAAGTGGGTATAAGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACA 996
Query 1076 GTGAAGAGATTTGGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTT 1135
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 997 ATGAAGAGATTTGGGGGAAGGTCGAGTGGTTTGATGCGGTGCTTAGAGTCCCTAAGTCTT 1056
Query 1136 ATAAATTCGTCTGTGCTA 1153
| ||| || | |||||||
Sbjct 1057 ACAAAATCTTGTGTGCTA 1074
> Ahg357124 jgi|Araly1|357124|fgenesh1_pg.C_scaffold_8000911
Length=2640
Score = 516 bits (279), Expect = 2e-145
Identities = 516/624 (83%), Gaps = 41/624 (7%)
Strand=Plus/Plus
Query 566 ACTTTAATGGGAGGA-CGTATTTCCCAGGAAGCTCTGAAAAGCCAGATTCTTTGAACTGT 624
||||| |||||| | | ||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2039 ACTTTGATGGGACTATC-TATTTAGCAGGAAGCTCTGAAAATCCAGATTCTTTGAACTGT 2097
Query 625 GTTGAAGTGTACAACACAAAT-ACTCAG-ACTTGGAATCCCGTGCCTCCCCA-AAAACGA 681
|||||| |||||||||| ||| |||| | ||||||||||||||||| |||| || |||
Sbjct 2098 GTTGAAATGTACAACAC-AATGACTC-GAACTTGGAATCCCGTGCC-GCCCAGAAGACGG 2154
Query 682 AAACTCAAATTCGG-AAATATGGAAGGAAAGATTTACAT-ACCCCCTTGTCAAGAGAATC 739
| | ||||||| || |||||||||||||||||||||| | | | |||| |||| ||
Sbjct 2155 ATATTCAAATT-GGAAAATATGGAAGGAAAGATTTACGTGA-ACGTTTGTGTAGAG--TC 2210
Query 740 -A-T-AGGAAGGCTGTGGC-TCTAAAC-CCAAAGGTTTTGACATGGGAAGCGGTAGGATT 794
| | ||| ||| ||| || | | ||| |||||| || |||||||||||||| || |||
Sbjct 2211 TACTAAGG-AGGTTGT-GCTTGT-AACGCCAAAGATTATGACATGGGAAGCGTTA-AATT 2266
Query 795 GGGTACGAATTTGGATAGGGGTTCTTTTTGTATGATAGGGAACATAGCCTAT-TGTTATG 853
| | |||||||| |||||||| |||||| ||||| ||| ||| |||| | ||||
Sbjct 2267 ---T--GGATTTGGATCGGGGTTCTCTTTGTACGATAGATAACGTAGTCTATCT-TTATA 2320
Query 854 ACCCTAGTGG-GAAGTTTAGATGGATG-AATTGTAACACTGCGGAAG--G-AGACTGGAG 908
|||||||||| | | ||| || | | || || || | ||||| | || ||| |
Sbjct 2321 ACCCTAGTGGAGTA-TTTCTATTTA-GAAAAGGTTTCATTAAGGAAGCAGTAGTTTGGGG 2378
Query 909 CAGATTA-GAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAG 967
| |||| | |||||||||| |||| ||||||||||||| ||| ||| ||||||||||||
Sbjct 2379 AATATTACG-GGGTTTAGAAAGGCTGCCTAAGTTTGCTAAATACAGTGCTGTTAAATTAG 2437
Query 968 CGGAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATA 1027
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2438 CGGATTATGGTGGTAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATA 2497
Query 1028 AGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTT 1087
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2498 AGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAATGAAGAGATTT 2557
Query 1088 GGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCT 1147
|||||||||||||||||||||||||||| |||| ||||||||||||||| ||| || | |
Sbjct 2558 GGGGGAAGGTCGAGTGGTTTGATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGT 2617
Query 1148 GTGCTAAAT-CTGCTACTGTTTGA 1170
|||||| | |||||||| |||||
Sbjct 2618 GTGCTAC-TGCTGCTACTCTTTGA 2640
> Ahg319889 jgi|Araly1|319889|fgenesh1_pm.C_scaffold_3002905
Length=1092
Score = 411 bits (222), Expect = 9e-114
Identities = 318/362 (88%), Gaps = 16/362 (4%)
Strand=Plus/Plus
Query 814 GGTTCTTTTTGTATGATAG-GGAACATAG-CCTATTGTTATGACCCTAGTGGGAAGTTTA 871
||||||||||||||||||| || | || | ||||| |||||||||||||| |||||||
Sbjct 742 GGTTCTTTTTGTATGATAGAGG-AGAT-GACCTATCATTATGACCCTAGTGTAAAGTTTA 799
Query 872 GATGGATG-AATTGTAACACTGCGGAAGGAGACTGGAGCAGATTAGAGGGTTTAGAAGGG 930
|||||| | || || | || || ||||| ||||| | ||||| ||| |||||||||
Sbjct 800 GATGGA-GAAAAAGT---A-TG-GG-AGGAGTTTGGAGAACATTAGGGGGCTTAGAAGGG 852
Query 931 CTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCGGAATATGGCGGGAAGCTGGTT 990
||||||||||||||||||||||||||||||||||| ||||| | ||| || |||||||||
Sbjct 853 CTACCTAAGTTTGCTAGATATAGTACTGTTAAATTGGCGGATTGTGGTGGTAAGCTGGTT 912
Query 991 GTTTTGTGGGACAAGTATGTAGC-TGCAAGTGGGTATAAGGAGAAGATGATTTGGTGTGC 1049
|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 913 GTTTTGTGGGACAAGTATGT-GCCTGCAAGTGGGTATGAGGAGAAGATGATTTGGTGTGC 971
Query 1050 AGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTGGGGGAAGGTCGAGTGGTTTGA 1109
||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||
Sbjct 972 AGAAATTTCGCTTGAAAGGCGCAACAAAGAAGAGATTTTGGGGAAGGTCGAGTGGTTCGA 1031
Query 1110 TGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCTG-TGCTAAATCTGCTACTGTTT 1168
||| ||||||||||||||||||||||| ||||| || || ||||||||||||||||||||
Sbjct 1032 TGCAGTTCTTACAGTCCCTAAGTCTTACAAATTTGT-TGATGCTAAATCTGCTACTGTTT 1090
Query 1169 GA 1170
||
Sbjct 1091 GA 1092
> Ahg949356 jgi|Araly1|949356|scaffold_801243.1
Length=1196
Score = 351 bits (190), Expect = 6e-96
Identities = 248/276 (90%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 913 TTAGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCGGAA 972
||| ||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 918 TTAAAGGGTATAGAAGGGCTACCTAAGTTTTCTAGATATTGTACTGTTAAATTGGCGGAG 977
Query 973 TATGGCGGGAAGCTGGTTG-TTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATAAGGA 1031
|||||| | ||||||| || ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 978 TATGGCAGCAAGCTGG-TGATTTTGTGGGACAAGTGTGTAGCTGCCAGTGGGTATAAGGA 1036
Query 1032 GAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTGGGG 1091
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1037 GAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATGCGCAACAGTGAAGAGATTTGGGG 1096
Query 1092 GAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCTGTGC 1151
||||||||||||||| ||||||| |||| ||||||||||||||| ||| || | |||||
Sbjct 1097 GAAGGTCGAGTGGTTCCATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGTGTGC 1156
Query 1152 TAAAT-CTGCTACTGTTTGATTGATGACTCAGGACA 1186
|| | |||||||| ||||||| ||| |||| ||||
Sbjct 1157 TAC-TGCTGCTACTCTTTGATTAATGGCTCATGACA 1191
> Ahg314877 jgi|Araly1|314877|fgenesh1_pm.C_scaffold_1003657
Length=1101
Score = 289 bits (156), Expect = 4e-77
Identities = 227/262 (87%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 910 AGATTAGAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGCG 969
||| ||| |||||||||||||||||| ||||||||||| ||| ||||||||| ||| |||
Sbjct 841 AGAGTAGCGGGTTTAGAAGGGCTACCGAAGTTTGCTAGTTATTGTACTGTTAGATTGGCG 900
Query 970 GAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAG-CTGCAAGTGGGTATAA 1028
|| || || || ||| |||| ||||| ||||| |||||||| | |||| |||||||||||
Sbjct 901 GATTACGGTGGTAAGTTGGTGGTTTTTTGGGATAAGTATGT-GCCTGCTAGTGGGTATAA 959
Query 1029 GGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTG 1088
| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 960 GAAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAATTCGCAGTGGTGAAGAGATTTC 1019
Query 1089 GGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCTG 1148
|||||||||||||||||||||| | || |||||||| |||||||||||||||||||| |
Sbjct 1020 GGGGAAGGTCGAGTGGTTTGATTCAGTGCTTACAGTTCCTAAGTCTTATAAATTCGTGAG 1079
Query 1149 TGCTAAATCTGCTACTGTTTGA 1170
||||| |||||||| |||||
Sbjct 1080 TGCTATCGCTGCTACTCTTTGA 1101
> Ahg948729 jgi|Araly1|948729|scaffold_800616.1
Length=1015
Score = 252 bits (136), Expect = 6e-66
Identities = 225/267 (84%), Gaps = 10/267 (4%)
Strand=Plus/Plus
Query 919 GGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTAC-TGTTAAATTAGCGGAATATGG 977
||||| ||||| || ||||| |||| || |||||| | ||||||| | || || |||||
Sbjct 742 GGTTTGGAAGGACTGCCTAAATTTGTTACTTATAGT-CGTGTTAAACTGGCAGATTATGG 800
Query 978 CGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATAAGGAGAAGAT 1037
|| || ||| ||||||||||||||||||| | ||||||||||||||| ||| |||||
Sbjct 801 TGGAAATATGGCAGTTTTGTGGGACAAGTATGCACCTGCAAGTGGGTATATGGATAAGAT 860
Query 1038 GATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTGGGGGAAGGT 1097
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 861 GATTTGGTGTGCAGAGATTTCGCTTGAAAGGCGAAACAGTGAAGAGATTTGGGGGAAGGT 920
Query 1098 CGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGT-C-TG-TGCTAA 1154
| ||||||||||||| || |||| |||||| ||||||||| |||| || | || | ||
Sbjct 921 CAAGTGGTTTGATGCTGTGCTTAAAGTCCCCAAGTCTTATGAATTTGTGCATGAT-CTTG 979
Query 1155 ATCTGCTACTGTTTGATTGA-TGACTC 1180
||||||||||||||| || ||||||
Sbjct 980 --CTGCTACTGTTTGAT-GAATGACTC 1003
> Ahg331398 jgi|Araly1|331398|fgenesh1_pm.C_scaffold_8000741
Length=1041
Score = 113 bits (61), Expect = 3e-24
Identities = 182/239 (76%), Gaps = 13/239 (5%)
Strand=Plus/Plus
Query 910 AGATTAGAGGGTTTAGA-AGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAGC 968
|||| | ||||||| || ||| | |||||||||| || ||| || |||| | || ||
Sbjct 782 AGATGA-AGGGTTT-GACAGGATTGCCTAAGTTTGAAAGTTATGGTTGTGTTCAGTTGGC 839
Query 969 GGAATATGGCGGGAAGCTGGTTGTTTTGTGGGAC-AAG-TATGTAGC-T-GCAAGTGGGT 1024
||| ||||| || ||| ||| ||||| | || | || | ||| || | ||| ||| |
Sbjct 840 GGATTATGGTGGAAAGATGGCGGTTTTAT-GGTCTGAGCT-TGT-GCTTACCAA-TGGCT 895
Query 1025 ATAAGGAGAAGATGATTTGGTGTGCAG-AGATTTCGCTTGAAAAGCGCAACAGTGAAGAG 1083
|||| | ||||||||||||||||| | | ||| ||||||| | ||| || ||||||||
Sbjct 896 GTAAGAACAAGATGATTTGGTGTGCGGTA-ATTGCGCTTGAGAGGCGTAATGGTGAAGAG 954
Query 1084 ATTTGGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATT 1142
|||||||||||||||||||||| ||| | ||| || || ||||| || || | ||||||
Sbjct 955 ATTTGGGGGAAGGTCGAGTGGTGTGACGAGGTGCTAACGGTCCCCAATTCATCTAAATT 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5