BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49000.2 Length=1119 Score E Sequences producing significant alignments: (Bits) Value Ahg494961 jgi|Araly1|494961|fgenesh2_kg.8__777__AT5G49000.2 1382 0.0 Ahg333104 jgi|Araly1|333104|fgenesh1_pm.C_scaffold_34000003 1356 0.0 > Ahg494961 jgi|Araly1|494961|fgenesh2_kg.8__777__AT5G49000.2 Length=1011 Score = 1382 bits (748), Expect = 0.0 Identities = 928/1014 (92%), Gaps = 15/1014 (1%) Strand=Plus/Plus Query 118 TTGTACTACCCAATTCTCTCGTTAGTCTCCAAGAGCTCTCGAACCCTCGTTACTTCGCCG 177 ||||||||||| |||||||| |||||||||||||||| ||||||||||||| |||| ||| Sbjct 1 TTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTCGAACCCTCGTTGCTTCACCG 60 Query 178 GAGCTATACAAGACTCGATCTTTCTTCAACCGAACGGAGAGTTGTCTCTATGTATGCTTA 237 ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 61 GAGCTTTACAAGACTCGATCTTTCTTCAACCGCACGGAGAGTTGTCTCTATGTGTGCTTA 120 Query 238 GATTTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTACCGAAAACC---T--AA-C 291 || ||||||||||||||||||||||||||||||||||||||||||||||| | || | Sbjct 121 GAATTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTACCGAAAACCTAATCAAACC 180 Query 292 C-AA--AACATCACCGAGAAGACAAAGAACTCAAGCGGGTTTGTTTTAGCCCCAATCCCA 348 | || ||||||||||||||||||||||||||||| |||| ||||| |||||||||||| Sbjct 181 CTAACCAACATCACCGAGAAGACAAAGAACTCAAGTGGGTACGTTTTGGCCCCAATCCCA 240 Query 349 AATCACCATTCACATAGTTCGAGTATCGTTGCTATTGGGTCTAACATCTATGCCATTGGT 408 ||||||||||| | |||| ||||| ||||||| |||||||||| ||||||||||||||| Sbjct 241 AATCACCATTCCCCTAGTGCGAGTCTCGTTGCGGTTGGGTCTAATATCTATGCCATTGGT 300 Query 409 GGATCCATTGAGAATGCACCCTCTTCTAAAGTCTCAATTTTAGACTGCAGGTCTCATACA 468 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 301 GGATCCATTGAGAATGCACCGTCTTCTAGGGTCTCAATTTTAGACTGCAGGTCTCATACG 360 Query 469 TGGCACGAGGCACCAAGCATGAGGATGAAGCGGAATTATCCAGCTGCTAATGTTGTTGAT 528 ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 361 TGGCACGAGGCGCCAAGCATGCGGATGAAGCGGAATTACCCAGCTGCTAATGTTGTTGAT 420 Query 529 GGGAAGATTTATGTAGCAGGAGGCTTGGAAGAGTTTGATTCATCTAAATGGATGGAGGTT 588 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 421 GGGAAGATTTATGTAGCAGGAGGCTTGGAAGACTTTGATTCCTCTAAATGGATGGAGGTT 480 Query 589 TTCGATATAAAGACTCAAACTTGGGAGTTTGTGTTAAGCCCTTTAGCGGAGAGATTTATA 648 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 481 TTCGATACGAAGACTCAAACTTGGGAGTTTGTGTTGTGCCCTTTAGCGGAGAGATTCGTA 540 Query 649 TATAGGAGCTTGGTGATTGAAGGAGAAATCTACATTTTTGGGGATAAGGTTGTGACTTAC 708 || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 541 TACAGGAGCTTAGTGATTGATGGAGAAATCTACATTTTTGGGGATAAGGTTGTGACCTAC 600 Query 709 AAGCCTAAAGAAGATAGATGGGGAGGTGTAGGAGAACATCAGAGTATGGATTTGGGATTG 768 ||||| ||||||||||||||||||| || |||||| ||||||||||||||||| || ||| Sbjct 601 AAGCCAAAAGAAGATAGATGGGGAGATGAAGGAGAGCATCAGAGTATGGATTTAGGTTTG 660 Query 769 TTTTTTCATTCTTATTGCGTGATAGATAATGTACTGTATTGTTATCGTCCTGGTGGAATC 828 | ||||||||| |||||||| |||||||| || || ||||||||||| |||||||||||| Sbjct 661 TATTTTCATTCGTATTGCGTTATAGATAACGTTCTCTATTGTTATCGACCTGGTGGAATC 720 Query 829 AAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAGGGGTTTGAAGGGATTGTCT 888 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 721 AAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAGGGGTTTGAAAGGATTGTCT 780 Query 889 AAGCTTGCTAGTAGCTGTGTTAAGTTAGCGGATTATGGTGGAAAGATGGCTCTTTTGTGG 948 |||||||||||||| ||||||| ||| |||||||||||||||||||| || |||| ||| Sbjct 781 AAGCTTGCTAGTAGTTGTGTTAGGTTGGCGGATTATGGTGGAAAGATTGCGATTTTTTGG 840 Query 949 GACAAGTATATCCC-TTGTAGTGGGAATAAGAGTCAT-TCGATTTCGTGTGCGGTGGTTT 1006 ||||||||| |||| || |||||| ||||||||||| | |||||||||||||||| ||| Sbjct 841 GACAAGTAT-TCCCCTTCTAGTGGTTATAAGAGTCATAT-GATTTCGTGTGCGGTGATTT 898 Query 1007 CCCTTGAGA-GATGCAAGAATCAGGGTATTAGGGGAAAGGTTGAGTGGTTTGATGATATG 1065 |||||| || | ||||| |||||||||||| | ||||||||||| ||||||||||||||| Sbjct 899 CCCTTG-GAAGTTGCAAAAATCAGGGTATTCGAGGAAAGGTTGAATGGTTTGATGATATG 957 Query 1066 CTTACGGTACCTAGCTCTTATAACTTTGTGGGTGCTCTTGCTGCTACTCTTTGA 1119 ||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 CTTACAGTCCCTAGCTCTTATAACTTTGTGGGTGCTCTTGCTGCTACTCTTTGA 1011 > Ahg333104 jgi|Araly1|333104|fgenesh1_pm.C_scaffold_34000003 Length=1119 Score = 1356 bits (734), Expect = 0.0 Identities = 980/1097 (89%), Gaps = 24/1097 (2%) Strand=Plus/Plus Query 41 AACCGTCACCGGAATCGACCCCAAACCCGTCACTTCCCGATGATTTGAT-TGTGAGCAT- 98 ||| ||| |||||||| ||| ||| | |||||||||||||||||| | | |||| | Sbjct 29 AACGGTCGCCGGAATCAACCTCAATTTCATCACTTCCCGATGATTTGGTAT-TGAG-TTG 86 Query 99 CTTAGCCCGAGTCTCTAGATTGTACTACCCAATTCTCTCGTTAGTCTCCAAGAGCTCTCG 158 ||| || || || || |||||||||||||| |||||||| |||||||||||||||| ||| Sbjct 87 CTTCGCACGCGTATCAAGATTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTCG 146 Query 159 AACCCTCGTTACTTCGCCGGAGCTATACAAGACTCGATCTTTCTTCAACCGAACGGAGAG 218 |||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct 147 AACCCTCGTTGCTTCACCGGAGCTTTACAAGACTCGATCTTTCTTCAACCGCACGGAGAG 206 Query 219 TTGTCTCTATGTATGCTTAGATTTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTA 278 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 207 TTGTCTCTATGTGTGCTTAGAATTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTA 266 Query 279 CCGAAAACC---T--AA-CC-AA--AACATCACCGAGAAGACAAAGAACTCAAGCGGGTT 329 ||||||||| | || || || ||||||||||||||||||||||||||||| |||| Sbjct 267 CCGAAAACCTAATCAAACCCTAACCAACATCACCGAGAAGACAAAGAACTCAAGTGGGTA 326 Query 330 TGTTTTAGCCCCAATCCCAAATCACCATTCACATAGTTCGAGTATCGTTGCTATTGGGTC 389 ||||| ||||||||||||||||||||||| | |||| ||||| ||||||| ||||||| Sbjct 327 CGTTTTGGCCCCAATCCCAAATCACCATTCCCCTAGTGCGAGTCTCGTTGCGGTTGGGTC 386 Query 390 TAACATCTATGCCATTGGTGGATCCATTGAGAATGCACCCTCTTCTAAAGTCTCAATTTT 449 ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 387 TAATATCTATGCCATTGGTGGATCCATTGAGAATGCACCGTCTTCTAGGGTCTCAATTTT 446 Query 450 AGACTGCAGGTCTCATACATGGCACGAGGCACCAAGCATGAGGATGAAGCGGAATTATCC 509 |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| || Sbjct 447 AGACTGCAGGTCTCATACGTGGCACGAGGCGCCAAGCATGCGGATGAAGCGGAATTACCC 506 Query 510 AGCTGCTAATGTTGTTGATGGGAAGATTTATGTAGCAGGAGGCTTGGAAGAGTTTGATTC 569 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 507 AGCTGCTAATGTTGTTGATGGGAAGATTTATGTAGCAGGAGGCTTGGAAGACTTTGATTC 566 Query 570 ATCTAAATGGATGGAGGTTTTCGATATAAAGACTCAAACTTGGGAGTTTGTGTTAAGCCC 629 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 567 CTCTAAATGGATGGAGGTTTTCGATACGAAGACTCAAACTTGGGAGTTTGTGTTGTGCCC 626 Query 630 TTTAGCGGAGAGATTTATATATAGGAGCTTGGTGATTGAAGGAGAAATCTACATTTTTGG 689 ||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||| Sbjct 627 TTTAGCGGAGAGATTCGTATACAGGAGCTTAGTGATTGATGGAGAAATCTACATTTTTGG 686 Query 690 GGATAAGGTTGTGACTTACAAGCCTAAAGAAGATAGATGGGGAGGTGTAGGAGAACATCA 749 ||||||||||||||| |||||||| ||||||||||||||||||| || |||||| ||||| Sbjct 687 GGATAAGGTTGTGACCTACAAGCCAAAAGAAGATAGATGGGGAGATGAAGGAGAGCATCA 746 Query 750 GAGTATGGATTTGGGATTGTTTTTTCATTCTTATTGCGTGATAGATAATGTACTGTATTG 809 |||||||||||| || |||| ||||||||| |||||||| |||||||| || || ||||| Sbjct 747 GAGTATGGATTTAGGTTTGTATTTTCATTCGTATTGCGTTATAGATAACGTTCTCTATTG 806 Query 810 TTATCGTCCTGGTGGAATCAAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAG 869 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 TTATCGACCTGGTGGAATCAAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAG 866 Query 870 GGGTTTGAAGGGATTGTCTAAGCTTGCTAGTAGCTGTGTTAAGTTAGCGGATTATGGTGG 929 ||||||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||| Sbjct 867 GGGTTTGAAAGGATTGTCTAAGCTTGCTAGTAATTGTGTTAGGTTGGCGGATTATGGTGG 926 Query 930 AAAGATGGCTCTTTTGTGGGACAAGTATATCCC-TTGTAGTGGGAATAAGAGTCAT-TCG 987 |||||| || |||| |||||||||||| |||| || |||||| ||||||||||| | | Sbjct 927 AAAGATTGCGATTTTTTGGGACAAGTAT-TCCCCTTCTAGTGGTTATAAGAGTCATAT-G 984 Query 988 ATTTCGTGTGCGGTGGTTTCCCTTGAGA-GATGCAAGAATCAGGGTATTAGGGGAAAGGT 1046 ||||||||||||||| ||||||||| || | ||||| |||||||||||| | |||||||| Sbjct 985 ATTTCGTGTGCGGTGATTTCCCTTG-GAAGTTGCAAAAATCAGGGTATTCGAGGAAAGGT 1043 Query 1047 TGAGTGGTTTGATGATATGCTTACGG-TA--CCT-AGCTCTTATAACTTTGTGGGTGCTC 1102 ||| |||||||||||||||||||| | || ||| | || ||||| |||||| || || Sbjct 1044 TGAATGGTTTGATGATATGCTTACAGCTATTCCTTA-CTGTTATAGTTTTGTGAATGTTC 1102 Query 1103 TTGCTGCTACTCTTTGA 1119 ||||||||||| ||||| Sbjct 1103 TTGCTGCTACTGTTTGA 1119 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41706471198 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5