BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49000.2
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494961 jgi|Araly1|494961|fgenesh2_kg.8__777__AT5G49000.2 1382 0.0
Ahg333104 jgi|Araly1|333104|fgenesh1_pm.C_scaffold_34000003 1356 0.0
> Ahg494961 jgi|Araly1|494961|fgenesh2_kg.8__777__AT5G49000.2
Length=1011
Score = 1382 bits (748), Expect = 0.0
Identities = 928/1014 (92%), Gaps = 15/1014 (1%)
Strand=Plus/Plus
Query 118 TTGTACTACCCAATTCTCTCGTTAGTCTCCAAGAGCTCTCGAACCCTCGTTACTTCGCCG 177
||||||||||| |||||||| |||||||||||||||| ||||||||||||| |||| |||
Sbjct 1 TTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTCGAACCCTCGTTGCTTCACCG 60
Query 178 GAGCTATACAAGACTCGATCTTTCTTCAACCGAACGGAGAGTTGTCTCTATGTATGCTTA 237
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 61 GAGCTTTACAAGACTCGATCTTTCTTCAACCGCACGGAGAGTTGTCTCTATGTGTGCTTA 120
Query 238 GATTTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTACCGAAAACC---T--AA-C 291
|| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 121 GAATTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTACCGAAAACCTAATCAAACC 180
Query 292 C-AA--AACATCACCGAGAAGACAAAGAACTCAAGCGGGTTTGTTTTAGCCCCAATCCCA 348
| || ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 181 CTAACCAACATCACCGAGAAGACAAAGAACTCAAGTGGGTACGTTTTGGCCCCAATCCCA 240
Query 349 AATCACCATTCACATAGTTCGAGTATCGTTGCTATTGGGTCTAACATCTATGCCATTGGT 408
||||||||||| | |||| ||||| ||||||| |||||||||| |||||||||||||||
Sbjct 241 AATCACCATTCCCCTAGTGCGAGTCTCGTTGCGGTTGGGTCTAATATCTATGCCATTGGT 300
Query 409 GGATCCATTGAGAATGCACCCTCTTCTAAAGTCTCAATTTTAGACTGCAGGTCTCATACA 468
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 301 GGATCCATTGAGAATGCACCGTCTTCTAGGGTCTCAATTTTAGACTGCAGGTCTCATACG 360
Query 469 TGGCACGAGGCACCAAGCATGAGGATGAAGCGGAATTATCCAGCTGCTAATGTTGTTGAT 528
||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 361 TGGCACGAGGCGCCAAGCATGCGGATGAAGCGGAATTACCCAGCTGCTAATGTTGTTGAT 420
Query 529 GGGAAGATTTATGTAGCAGGAGGCTTGGAAGAGTTTGATTCATCTAAATGGATGGAGGTT 588
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 421 GGGAAGATTTATGTAGCAGGAGGCTTGGAAGACTTTGATTCCTCTAAATGGATGGAGGTT 480
Query 589 TTCGATATAAAGACTCAAACTTGGGAGTTTGTGTTAAGCCCTTTAGCGGAGAGATTTATA 648
||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 481 TTCGATACGAAGACTCAAACTTGGGAGTTTGTGTTGTGCCCTTTAGCGGAGAGATTCGTA 540
Query 649 TATAGGAGCTTGGTGATTGAAGGAGAAATCTACATTTTTGGGGATAAGGTTGTGACTTAC 708
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 541 TACAGGAGCTTAGTGATTGATGGAGAAATCTACATTTTTGGGGATAAGGTTGTGACCTAC 600
Query 709 AAGCCTAAAGAAGATAGATGGGGAGGTGTAGGAGAACATCAGAGTATGGATTTGGGATTG 768
||||| ||||||||||||||||||| || |||||| ||||||||||||||||| || |||
Sbjct 601 AAGCCAAAAGAAGATAGATGGGGAGATGAAGGAGAGCATCAGAGTATGGATTTAGGTTTG 660
Query 769 TTTTTTCATTCTTATTGCGTGATAGATAATGTACTGTATTGTTATCGTCCTGGTGGAATC 828
| ||||||||| |||||||| |||||||| || || ||||||||||| ||||||||||||
Sbjct 661 TATTTTCATTCGTATTGCGTTATAGATAACGTTCTCTATTGTTATCGACCTGGTGGAATC 720
Query 829 AAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAGGGGTTTGAAGGGATTGTCT 888
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 AAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAGGGGTTTGAAAGGATTGTCT 780
Query 889 AAGCTTGCTAGTAGCTGTGTTAAGTTAGCGGATTATGGTGGAAAGATGGCTCTTTTGTGG 948
|||||||||||||| ||||||| ||| |||||||||||||||||||| || |||| |||
Sbjct 781 AAGCTTGCTAGTAGTTGTGTTAGGTTGGCGGATTATGGTGGAAAGATTGCGATTTTTTGG 840
Query 949 GACAAGTATATCCC-TTGTAGTGGGAATAAGAGTCAT-TCGATTTCGTGTGCGGTGGTTT 1006
||||||||| |||| || |||||| ||||||||||| | |||||||||||||||| |||
Sbjct 841 GACAAGTAT-TCCCCTTCTAGTGGTTATAAGAGTCATAT-GATTTCGTGTGCGGTGATTT 898
Query 1007 CCCTTGAGA-GATGCAAGAATCAGGGTATTAGGGGAAAGGTTGAGTGGTTTGATGATATG 1065
|||||| || | ||||| |||||||||||| | ||||||||||| |||||||||||||||
Sbjct 899 CCCTTG-GAAGTTGCAAAAATCAGGGTATTCGAGGAAAGGTTGAATGGTTTGATGATATG 957
Query 1066 CTTACGGTACCTAGCTCTTATAACTTTGTGGGTGCTCTTGCTGCTACTCTTTGA 1119
||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTTACAGTCCCTAGCTCTTATAACTTTGTGGGTGCTCTTGCTGCTACTCTTTGA 1011
> Ahg333104 jgi|Araly1|333104|fgenesh1_pm.C_scaffold_34000003
Length=1119
Score = 1356 bits (734), Expect = 0.0
Identities = 980/1097 (89%), Gaps = 24/1097 (2%)
Strand=Plus/Plus
Query 41 AACCGTCACCGGAATCGACCCCAAACCCGTCACTTCCCGATGATTTGAT-TGTGAGCAT- 98
||| ||| |||||||| ||| ||| | |||||||||||||||||| | | |||| |
Sbjct 29 AACGGTCGCCGGAATCAACCTCAATTTCATCACTTCCCGATGATTTGGTAT-TGAG-TTG 86
Query 99 CTTAGCCCGAGTCTCTAGATTGTACTACCCAATTCTCTCGTTAGTCTCCAAGAGCTCTCG 158
||| || || || || |||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 87 CTTCGCACGCGTATCAAGATTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTCG 146
Query 159 AACCCTCGTTACTTCGCCGGAGCTATACAAGACTCGATCTTTCTTCAACCGAACGGAGAG 218
|||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 147 AACCCTCGTTGCTTCACCGGAGCTTTACAAGACTCGATCTTTCTTCAACCGCACGGAGAG 206
Query 219 TTGTCTCTATGTATGCTTAGATTTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTA 278
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 207 TTGTCTCTATGTGTGCTTAGAATTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTA 266
Query 279 CCGAAAACC---T--AA-CC-AA--AACATCACCGAGAAGACAAAGAACTCAAGCGGGTT 329
||||||||| | || || || ||||||||||||||||||||||||||||| ||||
Sbjct 267 CCGAAAACCTAATCAAACCCTAACCAACATCACCGAGAAGACAAAGAACTCAAGTGGGTA 326
Query 330 TGTTTTAGCCCCAATCCCAAATCACCATTCACATAGTTCGAGTATCGTTGCTATTGGGTC 389
||||| ||||||||||||||||||||||| | |||| ||||| ||||||| |||||||
Sbjct 327 CGTTTTGGCCCCAATCCCAAATCACCATTCCCCTAGTGCGAGTCTCGTTGCGGTTGGGTC 386
Query 390 TAACATCTATGCCATTGGTGGATCCATTGAGAATGCACCCTCTTCTAAAGTCTCAATTTT 449
||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 387 TAATATCTATGCCATTGGTGGATCCATTGAGAATGCACCGTCTTCTAGGGTCTCAATTTT 446
Query 450 AGACTGCAGGTCTCATACATGGCACGAGGCACCAAGCATGAGGATGAAGCGGAATTATCC 509
|||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 447 AGACTGCAGGTCTCATACGTGGCACGAGGCGCCAAGCATGCGGATGAAGCGGAATTACCC 506
Query 510 AGCTGCTAATGTTGTTGATGGGAAGATTTATGTAGCAGGAGGCTTGGAAGAGTTTGATTC 569
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 507 AGCTGCTAATGTTGTTGATGGGAAGATTTATGTAGCAGGAGGCTTGGAAGACTTTGATTC 566
Query 570 ATCTAAATGGATGGAGGTTTTCGATATAAAGACTCAAACTTGGGAGTTTGTGTTAAGCCC 629
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 567 CTCTAAATGGATGGAGGTTTTCGATACGAAGACTCAAACTTGGGAGTTTGTGTTGTGCCC 626
Query 630 TTTAGCGGAGAGATTTATATATAGGAGCTTGGTGATTGAAGGAGAAATCTACATTTTTGG 689
||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 627 TTTAGCGGAGAGATTCGTATACAGGAGCTTAGTGATTGATGGAGAAATCTACATTTTTGG 686
Query 690 GGATAAGGTTGTGACTTACAAGCCTAAAGAAGATAGATGGGGAGGTGTAGGAGAACATCA 749
||||||||||||||| |||||||| ||||||||||||||||||| || |||||| |||||
Sbjct 687 GGATAAGGTTGTGACCTACAAGCCAAAAGAAGATAGATGGGGAGATGAAGGAGAGCATCA 746
Query 750 GAGTATGGATTTGGGATTGTTTTTTCATTCTTATTGCGTGATAGATAATGTACTGTATTG 809
|||||||||||| || |||| ||||||||| |||||||| |||||||| || || |||||
Sbjct 747 GAGTATGGATTTAGGTTTGTATTTTCATTCGTATTGCGTTATAGATAACGTTCTCTATTG 806
Query 810 TTATCGTCCTGGTGGAATCAAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAG 869
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TTATCGACCTGGTGGAATCAAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAG 866
Query 870 GGGTTTGAAGGGATTGTCTAAGCTTGCTAGTAGCTGTGTTAAGTTAGCGGATTATGGTGG 929
||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 867 GGGTTTGAAAGGATTGTCTAAGCTTGCTAGTAATTGTGTTAGGTTGGCGGATTATGGTGG 926
Query 930 AAAGATGGCTCTTTTGTGGGACAAGTATATCCC-TTGTAGTGGGAATAAGAGTCAT-TCG 987
|||||| || |||| |||||||||||| |||| || |||||| ||||||||||| | |
Sbjct 927 AAAGATTGCGATTTTTTGGGACAAGTAT-TCCCCTTCTAGTGGTTATAAGAGTCATAT-G 984
Query 988 ATTTCGTGTGCGGTGGTTTCCCTTGAGA-GATGCAAGAATCAGGGTATTAGGGGAAAGGT 1046
||||||||||||||| ||||||||| || | ||||| |||||||||||| | ||||||||
Sbjct 985 ATTTCGTGTGCGGTGATTTCCCTTG-GAAGTTGCAAAAATCAGGGTATTCGAGGAAAGGT 1043
Query 1047 TGAGTGGTTTGATGATATGCTTACGG-TA--CCT-AGCTCTTATAACTTTGTGGGTGCTC 1102
||| |||||||||||||||||||| | || ||| | || ||||| |||||| || ||
Sbjct 1044 TGAATGGTTTGATGATATGCTTACAGCTATTCCTTA-CTGTTATAGTTTTGTGAATGTTC 1102
Query 1103 TTGCTGCTACTCTTTGA 1119
||||||||||| |||||
Sbjct 1103 TTGCTGCTACTGTTTGA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5