BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49010.1
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916441 jgi|Araly1|916441|Al_scaffold_0008_1192 1086 0.0
Ahg331329 jgi|Araly1|331329|fgenesh1_pm.C_scaffold_8000672 1064 0.0
Ahg949952 jgi|Araly1|949952|scaffold_801839.1 195 9e-49
Ahg949847 jgi|Araly1|949847|scaffold_801734.1 195 9e-49
Ahg938877 jgi|Araly1|938877|scaffold_503068.1 195 9e-49
> Ahg916441 jgi|Araly1|916441|Al_scaffold_0008_1192
Length=663
Score = 1086 bits (588), Expect = 0.0
Identities = 638/663 (96%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 234 ATGGCGTCGAATTCGGAAGCGGGAGGATCGGCGGATTACGAAACATTGATGTCGACATCG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGTCGAATTCGGAAGCGGGAGGATCGGCGGATTACGAAACATTGATGTCAACATCG 60
Query 294 GACGTTGAGCTATTGAAGAGGGCGTGGCGTAACGAGAAGGCGGCGCCGGAGATTCTTCAG 353
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGTTGAGCTCTTGAAGAGGGCGTGGCGTAACGAGAAGGCGGCGCCGGAGATTCTTCAG 120
Query 354 TACGAAGGAGCTCTTGTCGATAGAGCCAAAGAACAGATCGAATTAGTGGAAGAAACAATT 413
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TACGAAGGAGCTCTTGTCGATAGAGCCAAAGAACAGATCGAATTGGTGGAAGAAACAATT 180
Query 414 GAAGATTATGTGGAAAATGGCATAGATCCTCTGGTGGTGTCTCTATATCAGATGGATTTG 473
|| ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||
Sbjct 181 GACGATTATGTGGAAAATGGCATAGACCCTCTCGTGGTGTCACTTTATCAGATGGATTTA 240
Query 474 GACAGAGCCCAGTTTCTACTCAGATCATATCTCAGAGTTAGGCTTCTCAAGATAGAGAAG 533
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GACAGAACCCAGTTTCTACTCAGATCTTATCTCAGAGTTAGGCTTCTCAAGATAGAGAAG 300
Query 534 TTTATGTTCCACAACCTCAACTCAGAAGAAGCTGAAAGGCGACTTTCTGAGCAAGAGAAA 593
|||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 301 TTTATGTTTCACAACCTCAAGTCGGAAGAAGCTGAAAGGCGGCTTTCTGAGCAAGAGAAA 360
Query 594 GTGTTTGCTACCAGGTGTGCTGATGATTTGGCAAAGCATTTCGAAGAGACTGTACTGCTT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGTTTGCTACCAGGTGTGCTGATGATTTGGCAAAGCATTTCGAAGAGACTGTACTGCTT 420
Query 654 AAGCTGCCCGAGAATTATCAGTCGGTTCTCAAGCAATCCCTTATAAGTGAAGTGGATGAT 713
||| | |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 AAGTTACCCGAGAATTATCAGTCGGTTCTCAAGCAATCTCTCATAAGTGAAGTGGATGAT 480
Query 714 ATGGTGCCGCAGCCGCATTTGGATACCTTTGTTGTTTGTAGAAGCAAGAACTTTGTCTCC 773
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGGTGCCGCAGCCGCATTTGGATACCTTTGTTGTTTGTAGAAGCAAGAACTTTGTCTCC 540
Query 774 CTCAATCTATACGAAGAAGGAGAGAGCCCCGAGACTGTGGAGATGGAGCGCGGTGATCTC 833
||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 541 CTCAATCTATATGAAGAAGGAGAGAGCCCCGAAACCGTGGAAATGGAGCGCGGTGATCTC 600
Query 834 TACTTCATACGTTACAAGATTGTAAAAAGGGCAATCGAATCTGGCCAAATTGACTTGATC 893
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 TACTTCATACGTTACAAGATTGTAAAAAGGGCAATCGAATCTGGGCAAATTGACTTGATC 660
Query 894 TGA 896
|||
Sbjct 661 TGA 663
> Ahg331329 jgi|Araly1|331329|fgenesh1_pm.C_scaffold_8000672
Length=663
Score = 1064 bits (576), Expect = 0.0
Identities = 635/664 (96%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 234 ATGGCGTCGAATTCGGAAGCGGGAGGATCGGCGGATTACGAAACATTGATGTCGACATCG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGAATTCGGAAGCGGGAGGATCGGCGGATTACGAAACATTGATGTCGACATCG 60
Query 294 GACGTTGAGCTATTGAAGAGGGCGTGGCGTAACGAGAAGGCGGCGCCGGAGATTCTTCAG 353
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GACGTTGAGCTATTGAAGAGGGCGTGGCGTAACGAGAAGGCGGCGCCGGAAATTCTTCAA 120
Query 354 TACGAAGGAGCTCTTGTCGATAGAGCCAAAGAACAGATCGAATTAGTGGAAGAAACAATT 413
|||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||
Sbjct 121 TACGAAGGAGCTCTTGTCCAAAGAGCCAAAGAACAGATCGAACTGGTGGAAGAAACAATT 180
Query 414 GAAGATTATGTGGAAAATGGCATAGATCCTCTGGTGGTGTCTCTATATCAGATGGATTTG 473
|| ||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 181 GACGATTACGTGGAAAATGGCATAGACCCTTTGGTGGTGTCTCTTTATCAGATGGATTTA 240
Query 474 GACAGAGCCCAGTTTCTACTCAGATCATATCTCAGAGTTAGGCTTCTCAAGATAGAGAAG 533
|||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 241 GACAGAACCCAGTTTCTACTCAGATCCTATCTCAGGGTTAGGCTCCTCAAGATAGAGAAG 300
Query 534 TTTATGTTCCACAACCTCAACTCAGAAGAAGCTGAAAGGCGACTTTCTGAGCAAGAGAAA 593
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTATGTTCCACAACCTTAAGTCAGAAGAAGCTGAAAGGCGACTTTCTGAGCAAGAGAAG 360
Query 594 GTGTTTGCTACCAGGTGTGCTGATGATTTGGCAAAGCATTTCGAAGAGACTGTACTGCTT 653
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GTGTTTGCTACAAGGTGTGCTGATGATTTAGCAAAGCATTTCGAAGAGACTGTACTGCTT 420
Query 654 AAGCTGCCCGAGAATTATCAGTCGGTTCTCAAGCAATCCCTTATAAGTGAAGTGGATGAT 713
||| |||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 421 AAGTTGCCTGAGAATTATCAGTCTGTCCTCAAGCAATCCCTTATAAGTGAAGTGGATGAT 480
Query 714 ATGGTGCCGCAGCCGCATTTGGATACCTTTGTTGTTTGTAGAAGCAAGAACTTTGTCTCC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGGTGCCGCAGCCGCATTTGGATACCTTTGTTGTTTGTAGAAGCAAGAACTTTGTCTCC 540
Query 774 CTCAATCTATACGAAGAAGGAGAGAGCCCCGAGACTGTGGAGATGGAGCGCGGTGATCTC 833
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCAATCTATACGATGAAGGAGAGAGCCCCGAGACTGTGGAGATGGAGCGCGGTGATCTC 600
Query 834 TACTTCATACGTTACAAGATTGTAAAAAGG-GCAATCGAATCTGGCCAAATTGACTTGAT 892
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 601 TACTTCATACGTTACAAGATTGTAAAA-GGAGCAATCGAATCAGGCCAAATTGACTTGAT 659
Query 893 CTGA 896
||||
Sbjct 660 CTGA 663
> Ahg949952 jgi|Araly1|949952|scaffold_801839.1
Length=299
Score = 195 bits (105), Expect = 9e-49
Identities = 117/123 (95%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 402 GAAGAAACAATTGAAGATTATGTGGAAAATGGCATAGATCCTCTGGTGGTGTCTCTATAT 461
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 73 GAAGAAACAATTGAAGATTATGTGGAAAATGGCATAGACCCTCTCATGGTGTCTCTTTAT 132
Query 462 CAGATGGATTTGGACAGAGCCCAGTTTCTACTCAGATCATATCTCAGAGTTAGGCTTCTC 521
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 133 CAGATGGATTTGGACAGAGCCCAGTTTCTACTCAGATCTTATCTCAGGGTTAGGCTTCTC 192
Query 522 AAG 524
|||
Sbjct 193 AAG 195
Score = 93.5 bits (50), Expect = 3e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 267 GATTACGAAACATTGATGTCGACATCGGACGTTGAGCTATTGAAGAGGGCGTGGCG 322
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 GATTATGAAACACTGATGTCGACATCGGACGTTGAGCTATTGAAGAGGGCGTGGCG 62
> Ahg949847 jgi|Araly1|949847|scaffold_801734.1
Length=299
Score = 195 bits (105), Expect = 9e-49
Identities = 117/123 (95%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 402 GAAGAAACAATTGAAGATTATGTGGAAAATGGCATAGATCCTCTGGTGGTGTCTCTATAT 461
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 73 GAAGAAACAATTGAAGATTATGTGGAAAATGGCATAGACCCTCTCATGGTGTCTCTTTAT 132
Query 462 CAGATGGATTTGGACAGAGCCCAGTTTCTACTCAGATCATATCTCAGAGTTAGGCTTCTC 521
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 133 CAGATGGATTTGGACAGAGCCCAGTTTCTACTCAGATCTTATCTCAGGGTTAGGCTTCTC 192
Query 522 AAG 524
|||
Sbjct 193 AAG 195
Score = 99.0 bits (53), Expect = 7e-20
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 267 GATTACGAAACATTGATGTCGACATCGGACGTTGAGCTATTGAAGAGGGCGTGGCG 322
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 GATTATGAAACATTGATGTCGACATCGGACGTTGAGCTATTGAAGAGGGCGTGGCG 62
> Ahg938877 jgi|Araly1|938877|scaffold_503068.1
Length=299
Score = 195 bits (105), Expect = 9e-49
Identities = 117/123 (95%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 402 GAAGAAACAATTGAAGATTATGTGGAAAATGGCATAGATCCTCTGGTGGTGTCTCTATAT 461
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 73 GAAGAAACAATTGAAGATTATGTGGAAAATGGCATAGACCCTCTCATGGTGTCTCTTTAT 132
Query 462 CAGATGGATTTGGACAGAGCCCAGTTTCTACTCAGATCATATCTCAGAGTTAGGCTTCTC 521
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 133 CAGATGGATTTGGACAGAGCCCAGTTTCTACTCAGATCTTATCTCAGGGTTAGGCTTCTC 192
Query 522 AAG 524
|||
Sbjct 193 AAG 195
Score = 93.5 bits (50), Expect = 3e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 267 GATTACGAAACATTGATGTCGACATCGGACGTTGAGCTATTGAAGAGGGCGTGGCG 322
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 7 GATTATGAAACATTGATGTCGACATCGGACGTTGAGCTATTGAAGAGGGTGTGGCG 62
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44298829554
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5