BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G49015.1

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949363 jgi|Araly1|949363|scaffold_801250.1                        392    1e-108


> Ahg949363 jgi|Araly1|949363|scaffold_801250.1
Length=298

 Score =  392 bits (212),  Expect = 1e-108
 Identities = 259/282 (92%), Gaps = 1/282 (0%)
 Strand=Plus/Plus

Query  202  TGTTATAAACATTTGAGCAGAGATGCATTTGTGGCCATCGTTGAAACTTCGAAACTCTTT  261
            |||||| ||| ||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1    TGTTATCAAC-TTTTAGAAGAGATGCATTTGTGGCCATCATTGAAACTTCGAAACTCTTT  59

Query  262  CAAGAGCACTAGCCAGAAGAGATATCAAAGGATGAACAGTGGGAAACAAAGTCAAAGCAA  321
            ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct  60   CAAGAGCACTAGCCAGAAGAGATTTCAAAGGATGAACAGTGGGAATCGAAGTCAAAGCAA  119

Query  322  TCAGCAGAAACTCCTTGACGGCGACAAAGAATCTGGAAGCCCCGAGATTTCGTCTGGTGG  381
             ||||| ||||||||  ||||||||||||||||||| ||||||||||| || ||||||||
Sbjct  120  CCAGCAAAAACTCCTCAACGGCGACAAAGAATCTGGCAGCCCCGAGATGTCATCTGGTGG  179

Query  382  TGGGTTTGCTGTTGTTTGTAGAGATGTTGCCATGGTTCTTTCTTGCTGCTACTGCTGTTT  441
            ||| |||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||
Sbjct  180  TGGTTTTGCTGTTGTTTGCAGAGATGCTGCCATGGTTCTCTCTTGTTGCTACTGCTGTTT  239

Query  442  CTGCTGTGGAGCTTGCATTGATGAGGAGGAGATTTGATGCAA  483
            |||||||||||||||||||||||| || |||||||||| |||
Sbjct  240  CTGCTGTGGAGCTTGCATTGATGACGAAGAGATTTGATACAA  281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21939463675


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5