BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49020.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494964 jgi|Araly1|494964|fgenesh2_kg.8__780__AT5G49020.1 2505 0.0
Ahg478013 jgi|Araly1|478013|fgenesh2_kg.3__714__AT3G06930.1 1472 0.0
> Ahg494964 jgi|Araly1|494964|fgenesh2_kg.8__780__AT5G49020.1
Length=1640
Score = 2505 bits (1356), Expect = 0.0
Identities = 1532/1617 (95%), Gaps = 11/1617 (1%)
Strand=Plus/Plus
Query 70 ACATACTGTATTCTC-AAAACAATGGAGATTCCTTCTCTGAATAAGCAGCAAGAGTTCAC 128
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 ACATACTGTATCCTCAAAAACAATGGAGATTCCTTCTCTGAATAAGCAGCAAGAGTTCAC 91
Query 129 TCTCGCCTCCGTCACTGATCTCACTTCTCCTTCCTCATCTCTTTCGTCCTCTCCTGTTGT 188
|||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||
Sbjct 92 TCTCGCCTCCGTCACTGATCTCACTTCTTCTTCCTCATCTCCTTCGTCATCTCCTGTTGT 151
Query 189 AGCTACGTTTTCATGCGTTAATGAAGTCAAGGAACTCCGATTTCAGGAATC-GAAATCGT 247
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 152 AGCTACGTTTTCATGCGTTAATGAAGTCAAGGAACTCCAATTTCAGGAATCTG-AATCGT 210
Query 248 CTGATGGTTTCAGTTTTGATCTTAGTTCGACTCAGTTGTTCAAGTTGGGGCCACTTCAGT 307
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 211 CTGATGGTTTCAGTTTTGATCTTAGTTCAACTCAGTTGTTCAAGTTGGGGCCGCTTCTGT 270
Query 308 TCACTTGTGTATCTGATGGTTCGATTTCTTCTGCAAAGGAGAAATCGTCATTTTCTCGAG 367
||| ||||||||||||| ||| | ||||||||||||||| ||||||||||||||||
Sbjct 271 TCATTTGTGTATCTGATATTTC-A--GGTTCTGCAAAGGAGAATTCGTCATTTTCTCGAG 327
Query 368 GAGTTGTAATAAAATTTAGAGATGAGAAGGATAGCAAGGAGTTTTGTGATTCATTTGAGG 427
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 328 GAGTTGTAATAAAATTTAGAGACGACAAGGATAGCAAGGAATTTTGTGATTCATTTGAGG 387
Query 428 AATGTAAAAAGGATGATGCTGTTAAACAAGGATCAGCCTTGCCGAACGGAACAGTTGTTT 487
|||||||||||||| | ||||||||||||||||| |||| ||||||||| |||||||
Sbjct 388 AATGTAAAAAGGAT--T-CTGTTAAACAAGGATCATCCTTTTTGAACGGAACTGTTGTTT 444
Query 488 CAGCTAATAAAAGCAAGTTCGATGATAAGATTGAGGCTGCTTCAGCCAAAATGTATTTCC 547
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 445 CAGCTAATAAAAGCAAGTTCGATGATAAGATAGAGGCTGCTTCAGCCAAAATGTATTTCC 504
Query 548 ATTATTATGGACAACTTTTACATCAGCAAAATATGCTACAGGATTATGTGAGGACGGGTA 607
||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 505 ATTATTATGGACAACTTCTACATCAGCAAAATATGCTACAAGATTATGTGCGGACAGGTA 564
Query 608 CATATCATGCTGCAGTCATGGAGAACCGTTCAGATTTTTCTGGCCGTGTTGTTGTCGATG 667
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 565 CATATCATGCTGCAGTCATGGAGAACCGTTCAGACTTTTCTGGCCGTGTTGTTGTCGATG 624
Query 668 TAGGCGCTGGTAGTGGAATTTTGTCAATGTTTGCTGCACTGGCTGGTGCCAAGCATGTGT 727
| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 625 TGGGCGCTGGAAGTGGAATTTTGTCATTGTTTGCTGCACTGGCAGGTGCCAAGCATGTGT 684
Query 728 ATGCTGTGGAGGCGTCAGAAATGGCTGAATATGCCCGTAAACTGATTGCTGGAAACCCAT 787
||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 685 ATGCTGTTGAAGCGTCAGAAATGGCTGAATATGCCCGTAAGCTGATTGCTGGGAACCCAT 744
Query 788 TGCTTGCTGAGA-GGATCACAGTCATCAAGGGAAAAATTGAGGATATTGAGTTGCCTGAG 846
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 TGCTTGCTGA-ACGGATCACAGTCATCAAGGGAAAAATTGAGGATATTGAGTTGCCTGAG 803
Query 847 AAGGCCGATGTTTTGATCTCTGAACCAATGGGCACCCTATTGGTCAATGAGAGGATGCTG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 804 AAGGCCGATGTTTTGATCTCTGAACCAATGGGCACCCTATTGGTCAATGAGAGGATGTTG 863
Query 907 GAAACATATGTTATTGCTAGGGATCGTTTTCTGTCTCCAAACGGAAAAATGTTTCCGACG 966
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 864 GAAACATATGTTATTGCTAGGGACCGTTTTCTGTCTCCAAACGGAAAAATGTTTCCGACA 923
Query 967 GTTGGAAGGATCCACATGGCACCTTTCGCCGATGAATTCTTATTTGTTGAAATGGCAAAT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GTTGGAAGGATCCACATGGCACCTTTCGCCGATGAATTCTTATTTGTTGAAATGGCAAAT 983
Query 1027 AAGGCTTTGTTTTGGCAACAACAGAACTATTATGGAGTTGATTTGACACCTCTATATGTA 1086
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 AAGGCTTTATTTTGGCAGCAACAGAACTATTATGGAGTTGATTTGACACCTCTATATGTA 1043
Query 1087 TCAGCCCACCAGGGTTATTTTTCCCAGCCCGTGGTTGATGCATTTGATCCGAGATTATTG 1146
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1044 TCAGCCCACCAGGGTTATTTTTCCCAGCCCGTGGTCGATGCATTTGATCCAAGATTATTG 1103
Query 1147 GTGGCTCCCTCGATGTTTCATGTGATAGATTTCACTATGATGACGGAAGAACAATTTTAT 1206
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1104 GTGGCTCCCTCGATGTTTCATATGATAGATTTCACTAAAATGACGGAAGAACAATTTTAT 1163
Query 1207 GAGATTGATATCCCGTTGAAGTTCACTGCGTCTGTGTGTACCAGAATTCATGGACTTGCG 1266
||||| |||||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct 1164 GAGATCGATATCCCGTTGAAGTTCACAGCGTCAGTGTGTACCAGGGTGCATGGACTTGCG 1223
Query 1267 TGCTGGTTTGATGTTCTCTTTGACGGGAGCACGGTGCAAAGATGGTTTACAACTGCTCCC 1326
|| ||||| || ||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 1224 TGTTGGTTCGACGTTCTTTTTGACGGGAGCACGGTACAAAGATGGTTCACGACTGCTCCT 1283
Query 1327 GGTGCACCAACAACCCATTGGTACCAAATAAGATGTGTTCTCTCGCAGCCTATTCACGTC 1386
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1284 GGTGCACCAACGACCCATTGGTACCAAATAAGATGTGTTCTCTCGCAGCCTATTCATGTC 1343
Query 1387 ATGGCAGGGCAAGAGATCACTGGTAGACTTCATTTGATTGCCCACAGTGCTCAGAGTTAC 1446
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1344 ATGGCAGGGCAAGAGATTACTGGTAGACTTCATTTGGTTGCCCACAGTGCTCAGAGTTAT 1403
Query 1447 ACTATAAATCTAACACTCTCAGCTAAAATGTGGGGTCCCGGTGCCAATCAAGGTGGAATC 1506
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 ACTATAAATCTAACCCTCTCAGCTAAAATGTGGGGTCCCGGTGCCAATCAAGGTGGAATC 1463
Query 1507 CTCCAGACATCATCGTGCAAACTCGATCTGAAGGAACCCTATTATAGAATGTCTCAGCCA 1566
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1464 CTCCAGACATCATCGTGCAAACTCGATCTAAAGGAACCCTATTATAGAATGTCTCAGCCA 1523
Query 1567 CAGGTTTACCCTACACAGGAACCACCAGCTCAGTCGCAAGACATACATATACATAGTGAT 1626
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 1524 CAAGTTTACCCTACACAAGAACCACCAGCTCAGTCGCAAGACATACATATACATGGCGAT 1583
Query 1627 GACTTGGAAGAACTAGAGTTGCTACAACAAAACGCAAACGCTCAGCTCTAGAACTAG 1683
|||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1584 GACTTGGAAGAAGTAGAGTTACTACAACAAACCGCAAACGCTCAGCTCTAGAACTAG 1640
> Ahg478013 jgi|Araly1|478013|fgenesh2_kg.3__714__AT3G06930.1
Length=1930
Score = 1472 bits (797), Expect = 0.0
Identities = 1273/1497 (85%), Gaps = 55/1497 (4%)
Strand=Plus/Plus
Query 113 AGCAGCAAGAGTTCACTCTCGCCTCCGTCACTGATCTCACT-TCTCCTTCCTCATCTCTT 171
|||||| |||||| || | | ||| |||||||||||| || || ||||| | | ||
Sbjct 80 AGCAGCTGGAGTTCTCTTTAGACTCGGTCACTGATCTCTCTGCCT-CTTCCGC-T-TC-G 135
Query 172 TCGTCCTCTCCTGTTGTAGCTACGTTTTCATGCGTTAATGAAGTCAAGGAACTCCGATTT 231
|||||| |||| | ||||||||||||||| |||||| ||| ||||| ||| |||||||||
Sbjct 136 TCGTCCACTCCAGCTGTAGCTACGTTTTCCTGCGTTGATGGAGTCACGGAGCTCCGATTT 195
Query 232 CAGGAATCGAAATCGTCTGATGGTTTCAGTTTTGATCTTAG-T-TCGACTCAGTTGTTCA 289
| | ||||| | ||| | || |||||| |||||||| | | | || ||||||| ||||
Sbjct 196 CTGCAATCGGATTCGACCCATTGTTTCAATTTTGATC-TCGCTACCG-CTCAGTTATTCA 253
Query 290 AGTTGGGGCCACTTCAGTTCACT-TGTGTATCTGATGGTTCGATTTCTTCTGCAAAGGAG 348
||||||||||| | || |||| | |||||||||||| |||| | | |||||
Sbjct 254 AGTTGGGGCCAGTGCATTTCA-TCTGTGTATCTGATAGTTC-A--------G---AGGAG 300
Query 349 AAATCGTCATTTTCTCGAGGAGTTGTA-ATAAAATTTAGAGATGAGAAGGATAGCAAGGA 407
||| ||||| || | ||||| | | |||||||||| | |||| ||||||||||||||
Sbjct 301 AAA---TCATTCTCCCAAGGAG-TCAATATAAAATTTAAAAATGATAAGGATAGCAAGGA 356
Query 408 GTTTTGTGATTCATTTGAGGAATGTAAAAAGGATGATGCTGTTAAACAAGGATCAGCCTT 467
|||||||| || ||| | || || | |||||||| || |||| ||||||||| ||||
Sbjct 357 TTTTTGTGAGTCCTTTCAAGAGTGGAGAAAGGATGCTGTTGTT---CAAGGATCATCCTT 413
Query 468 GCCGAACGGAACAGTTGTTTCAGCTAATAAAAGCAAGTTCGATGA-TAAGATTGAGGCTG 526
| || ||||| | |||||||||||||||||||||||||| | |||||| ||||| |
Sbjct 414 TCAAAATGGAAC-G--GTTTCAGCTAATAAAAGCAAGTTCGA-CACTAAGATAGAGGC-G 468
Query 527 -CTTCAGCCAAAATGTATTTCCATTATTATGGACAACTTTTACATCAGCAAAATATGCTA 585
| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 469 TCATCGGCCAAAATGTATTTCCATTATTATGGACAACTTCTACATCAACAAAATATGCTA 528
Query 586 CAGGATTATGTGAGGACGGGTACATATCATGCTGCAGTCATGGAGAACCGTTCAGATTTT 645
|| |||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 529 CAAGATTATGTGAGGACAGGTACATATTATGCCGCAGTCATGGAGAATCGTTCAGATTTT 588
Query 646 TCTGGCCGTGTTGTTGTCGATGTAGGCGCTGGTAGTGGAATTTTGTCAATGTTTGCTGCA 705
|||| |||||||| |||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 589 GCTGGTCGTGTTGTGGTCGATGTGGGTGCTGGGAGTGGCATTTTGTCAATGTTTGCTGCC 648
Query 706 CTGGCTGGTGCCAAGCATGTGTATGCTGTGGAGGCGTCAGAAATGGCTGAATATGCCCGT 765
| |||||||||||| ||||||||||| || || || |||||||||||||| ||||| |||
Sbjct 649 CAGGCTGGTGCCAAACATGTGTATGCGGTTGAAGCATCAGAAATGGCTGAGTATGCTCGT 708
Query 766 AAACTGATTGCTGGAAACCCATTGCTT-GCTGAGA-GGATCACAGTCATCAAGGGAAAAA 823
|| |||||||||||||||||||| || ||||| | ||||||||||||||||||| |||
Sbjct 709 AAGCTGATTGCTGGAAACCCATTA-TTCGCTGA-ACGGATCACAGTCATCAAGGGTAAAG 766
Query 824 TTGAGGATATTGAGTTGCCTGAGAAGGCCGATGTTTTGATCTCTGAACCAATGGGCACCC 883
|||||||||| |||||||||||||| || ||| |||||||||||||||| |||||||||
Sbjct 767 TTGAGGATATCGAGTTGCCTGAGAAAGCAGATATTTTGATCTCTGAACCGATGGGCACCT 826
Query 884 TATTGGTCAATGAGAGGATGCTGGAAACATATGTTATTGCTAGGGATCGTTTTCTGTCTC 943
|||||||||| ||||| ||| | ||| | ||||| |||||||||||||||||| |||||
Sbjct 827 TATTGGTCAACGAGAGAATGTTAGAATCGTATGTAATTGCTAGGGATCGTTTTATGTCTT 886
Query 944 CAAACGGAAAAATGTTTCCGACGGTTGGAAGGATCCACATGGCACCTTTCGCCGATGAAT 1003
|||| || ||||||||||| || || |||||||| |||||||||||||| | |||||||
Sbjct 887 CAAAGGGCAAAATGTTTCCCACTGTCGGAAGGATTCACATGGCACCTTTTTCTGATGAAT 946
Query 1004 TCTTATTTGTTGAAATGGCAAATAAGGCTTTGTTTTGGCAACAACAGAACTATTATGGAG 1063
|||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 947 TCTTATTTATTGAGATGGCAAATAAGGCTATGTTTTGGCAACAGCAGAACTATTATGGAG 1006
Query 1064 TTGATTTGACACCTCTATATGTATCAGCCCACCAGGGTTATTTTTCCCAGCCCGTGGTTG 1123
||||| ||||||||||||||| |||||| ||||| ||||||||||| |||||||| ||||
Sbjct 1007 TTGATCTGACACCTCTATATGGATCAGCACACCAAGGTTATTTTTCTCAGCCCGTTGTTG 1066
Query 1124 ATGCATTTGATCCGAGATTATTGGTGGCTCCCTC-GATGTTTCATGTGATAGATTTCACT 1182
|||||||||||||||||||||| |||||| | || ||||||||| ||||||||||||||
Sbjct 1067 ATGCATTTGATCCGAGATTATTAGTGGCTTC-TCCGATGTTTCACATGATAGATTTCACT 1125
Query 1183 -ATGATGACGGAAGAACAATTTTATGAGATTGATATCCCGTTGAAGTTCACTGCGTCTGT 1241
| |||| ||||||| | ||||| ||||||||||||||||||||||||||||| || |
Sbjct 1126 CAA-ATGAAGGAAGAAGATTTTTACGAGATTGATATCCCGTTGAAGTTCACTGCTTCCAT 1184
Query 1242 GTGTACCAGAATTCATGGACTTGCGTGCTGGTTTGATGTTCTCTTTGACGGGAGCACGGT 1301
||| |||||| | ||||||||||| |||||||| || |||||||| ||||||||||||||
Sbjct 1185 GTGCACCAGAGTGCATGGACTTGCCTGCTGGTTCGACGTTCTCTTCGACGGGAGCACGGT 1244
Query 1302 GCAAAGATGGTTTACAACTGCTCCCGGTGCACCAACAACCCATTGGTACCAAATAAGATG 1361
||||||||| | ||||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct 1245 CCAAAGATGGCTCACAACTGCTCCTGGTGCACCTACAACGCATTGGTACCAAATCAGATA 1304
Query 1362 TGTTCTCTCGCAGCCTATTCACGTCATGGCAGGGCAAGAGATCACTGGTAGACTTCATTT 1421
||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct 1305 TGTTCTCTCGCAGCCTATTTACGTAATGGCAGGTCAAGAGATCACTGGTAGACTTCATTT 1364
Query 1422 GATTGCCCACAGTGCTCAGAGTTACACTATAAATCTAACACTCTCAGCTAAAATGTGGGG 1481
||| ||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||
Sbjct 1365 GATAGCCCACAGTGCTCAGAGTTACACCATAGATCTAACTTTATCAGCTAAAATGTGGGG 1424
Query 1482 TCCCGGTGCCAA-TCAAGGTGGAATCCTCCAGA-CATC-ATCGTGCAAACTCGATCTGAA 1538
||||||||| || |||||||||||| ||||| | |||| | | |||||| ||||||||||
Sbjct 1425 TCCCGGTGC-AAGTCAAGGTGGAATTCTCCA-ATCATCGA-CATGCAAATTCGATCTGAA 1481
Query 1539 GGAACCCTATTATAGAATGTCTCAGCCACAGGTTTACCCTA---CACAGGAACCACC 1592
||||| ||||||||||||||||||||||| | |||||| |||| ||||||||
Sbjct 1482 AGAACCTTATTATAGAATGTCTCAGCCACAAGCATACCCTGTTGCACAAGAACCACC 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5