BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G49040.1

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949367 jgi|Araly1|949367|scaffold_801254.1                        257    5e-68


> Ahg949367 jgi|Araly1|949367|scaffold_801254.1
Length=295

 Score =  257 bits (139),  Expect = 5e-68
 Identities = 183/205 (89%), Gaps = 0/205 (0%)
 Strand=Plus/Plus

Query  372  TTTTAAGACTGGGAAGTACAACGGGAGTACCATAACGATTCTTGGTCGGAACACGGTGAT  431
            |||||||||||| ||||| || ||||||||||| | |||||||||||| || |||||| |
Sbjct  71   TTTTAAGACTGGTAAGTATAATGGGAGTACCATCATGATTCTTGGTCGTAATACGGTGTT  130

Query  432  GTCCAAGGTTAGGGAAATGCCGGTGGTTGGAGGCAGTGGAATGTTCCGGTTTGCTAGAGG  491
             |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  131  ATCCAAGGTTAGGGAGATGCCAGTGGTTGGAGGCAGTGGAATGTTCCGGTTTGCTAGAGG  190

Query  492  TTATGTCGAAGCACGGACCAAGTTGTTCGATATGAAGACTGGTGATGCTACTGTTGAGTC  551
            ||||||||| || | |||||| | ||| ||||| ||||||||||| ||||||||||||| 
Sbjct  191  TTATGTCGAGGCTCAGACCAAATGGTTTGATATTAAGACTGGTGACGCTACTGTTGAGTA  250

Query  552  TAACTGTTATATCTTGCATTACTGA  576
            ||| ||||||||||||||||| |||
Sbjct  251  TAAGTGTTATATCTTGCATTATTGA  275



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21061885128


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5