BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G49050.1

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949368 jgi|Araly1|949368|scaffold_801255.1                        577    3e-164


> Ahg949368 jgi|Araly1|949368|scaffold_801255.1
Length=547

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 355/376 (94%), Gaps = 1/376 (0%)
 Strand=Plus/Plus

Query  78   AAAGCTAAAGAAAATC-AAAATGGCTAGTGGAAGTGAGCGTGTGGTGGTTGTCGGAGTAG  136
            ||||||||||| |||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct  1    AAAGCTAAAGAGAATCAAAAATGGCTAGTGGAAGTGAGCGTGTGGTGGTCGTAGGAGTAG  60

Query  137  ATGATTCAGCCCATAGCTACCATGCACTCGAGACGGCTCTTGATCTCTTTTTCATACCTT  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGATTCAGCCCATAGCTACCATGCACTCGAGACGGCTCTTGATCTCTTTTTCATACCTT  120

Query  197  TCAAGGCCAACCCACGATTCAAACTTGTCGTCCTTCACGCTCGACCAACAGCGACCTTCT  256
            ||||||||||||||| |||||||||||||||  ||||||  |||||||||||||||| ||
Sbjct  121  TCAAGGCCAACCCACAATTCAAACTTGTCGTTGTTCACGGACGACCAACAGCGACCTCCT  180

Query  257  TCCTCGGTGTTGCTGGCCCGGGAACGGTCGATATTATACCAATGGTGGAAGAAGATTTAA  316
            |||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||
Sbjct  181  TCCTCGGTGTTGCTGGTCCTGGAACGGTGGATATTATACCAATGGTGGAACAAGATTTAA  240

Query  317  ACAAGACCGCGGACTTGGTTAAGAAGAAGTGCGCCGAAGTGTGCTCGGCTAAGTCCGTTG  376
            |||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  241  ACAAGACCGCAGAATTGGTTAAGAAGAAGTGCTCCGAAGTGTGCTCGGCTAAGTCCGTTG  300

Query  377  AGATCTCGTCTTTGGAGGTGATTGAAGGAGATCCGAGAAACATAATGTTGGAAGCCGTGG  436
            |||||||||||||||||||||||||||||||||| || || || ||||||||||||||||
Sbjct  301  AGATCTCGTCTTTGGAGGTGATTGAAGGAGATCCAAGGAATATTATGTTGGAAGCCGTGG  360

Query  437  AGAGACATCATGCATG  452
            ||||||||||||||||
Sbjct  361  AGAGACATCATGCATG  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16368747681


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5