BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49060.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494970 jgi|Araly1|494970|fgenesh2_kg.8__786__AT5G49060.1 1829 0.0
> Ahg494970 jgi|Araly1|494970|fgenesh2_kg.8__786__AT5G49060.1
Length=1352
Score = 1829 bits (990), Expect = 0.0
Identities = 1182/1274 (93%), Gaps = 15/1274 (1%)
Strand=Plus/Plus
Query 86 AATTAGGGGTTTTGAATAGTGATGGATGGTAATAAGGATGATGCGTCTCGGTGTTTGAGA 145
||||| ||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 57 AATTA-GGGATTTGAAGAGTTATGGATGGTAATAAGGATGATGCGTCTCGTTGTTTGAGA 115
Query 146 ATCGCCGAAGACGCCATTGTTTCTGGTGATAAAGAACGAGCGTTGAAATTCATCAATATG 205
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 116 ATCGCCGAAGACGCCATTGCTTCTGGTGATAAAGAACGAGCGTTGAAATTTATCAAGATG 175
Query 206 GCGAAACGGCTTAATCCAAGTCTCTCTGTTGATGAACTTGTTGCTGCTTGTGACAATCTG 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GCGAAACGGCTTAATCCAAGTCTCTCTGTTGATGAACTTGTTGCTGCTTGTGACAATCTG 235
Query 266 GATTCAGTTTCGAGGAATTCTTCTGTTAGCGAGAAGCTTAAAACTATGGA-CG-G-TGAT 322
|||||| ||||||||||||| |||||||| ||||||||||||||| |||| | | ||||
Sbjct 236 GATTCAATTTCGAGGAATTCGTCTGTTAGTGAGAAGCTTAAAACTGTGGATGGTGATGAT 295
Query 323 GATGATAAGCTTGAGACTGGGAAAATGAAGTATACTGAGGAAAATGTGGATTTGGTTAGG 382
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 296 GATGATAAGCTTGAGACTGGGAAAATGAAGTATAATGAGGAAAATGTGGAGTTGGTTAGG 355
Query 383 AATATTATA-AGAAACAATGATTATTATGCGATTTTGGGTTTGGAAAAGAATTGTTCTGT 441
||||||| | || ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 AATATTA-AGAGGAACAACGATTATTATGCGATTTTGGGTTTGGAAAAGAATTGTTCGGT 414
Query 442 TGATGAGATTAGAAAAGCTTATAGGAAGTTGTCTTTGAAAGTTCATCCAGATAAGAACAA 501
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 415 TGAAGAGATTAGAAAAGCTTATAGGAAGTTGTCTTTGAAAGTTCATCCGGATAAGAACAA 474
Query 502 GGCACCTGGTTCAGAGGAGGCGTTTAAGAAAGTTTCGAAAGCGTTTACTTGTTTGAGTGA 561
||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 475 GGCTCCTGGTTCAGAGGAAGCGTTTAAGAAAGTTTTGAAGGCGTTTACTTGTTTGAGTGA 534
Query 562 TGGTAACTCGAGAAGACAGTTTGATCAGGTGGGGATTGTTGATGAGTTTGATCATGTTCA 621
|||||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 535 TGGTAATTCGAGACGCCAGTATGATCAGGTGGGGATTGTTGATGAGTTTGATCATGTTCA 594
Query 622 GAGGCGGAATCGTAGGCCGAGGAGGAGATATAATACGCGGAATGATTTCTTTGATGATGA 681
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 595 GAGGCGGAATCGTAGGCCGAGGAGGAGATATAACACGCGGAATGATTTCTTTGATGATGA 654
Query 682 GTTTGATCCTGAAGAGATATTCAGGACGGTTTTTGGTCAACAACGAGAGGTGTTTCGTGC 741
|||||||||||| |||||||||||| || ||||||||||||||||||| |||| ||||
Sbjct 655 GTTTGATCCTGATGAGATATTCAGGGCGTTTTTTGGTCAACAACGAGACATGTTCCGTGA 714
Query 742 TTCTCATGCTTATAGGACTAGACAACCACGTAACCAATTCCGAGAGGAGGAGATTAATGT 801
||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 715 TTCTCGTGCTTATAGGACTAGACAAGCACGTAACCAATTCCGAGAGGAGGAGCCTAATGT 774
Query 802 TGCTGGACCAAGTTGTTTGACGATTATTCAGATTTTGCCATTCTTTCTGCTTTTGTTGCT 861
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 775 GGCTGGACCAAGTTGTTTGACGATTATTCAGATTCTACCATTCTTTCTGCTTTTGTTACT 834
Query 862 GGCTTATTTACCCTTTTCTGAGCCTGACTATTCTCTGCACAAGAACCAGTCTTATCAGAT 921
||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 835 GGCTTATCTACCCTTTTCTGAGCCCGACTATTCTTTGCACAAGAACCAGTCTTATCAGAT 894
Query 922 ACCAAAGACGACACAGAATACGGAGATTAGTTTTTATGTTAGATCAGCATCAGCCTTTGA 981
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 895 ACCAAAGACGACACAGAATATGGAGATTAGCTTTTATGTTAGATCAGCATCAGCCTTCGA 954
Query 982 TGAGAAGTTTCCGCTCAGTAGCTC-AGCCCGAGCTAACCTTGAGGGCAACGTGATCAAAG 1040
||||||||||||||| ||||||| | | ||||| |||||||||||||||||||||||||
Sbjct 955 TGAGAAGTTTCCGCTTGGTAGCTCTA-CTCGAGCCAACCTTGAGGGCAACGTGATCAAAG 1013
Query 1041 AGTACAAACACTTTCTTTTCCAGTCTTGTCGCATTGAGCTTCAAAAACGTCGGTGGAACA 1100
|||| | ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1014 AGTATAGACATTTTCTATTCCAGTCTTGTCGCATTGAGCTTCAAAAACGGCGGTGGAACA 1073
Query 1101 AGAAGATACCAACCCCTCACTGCA-TCGAACTTCAAGATCGCGGATTTGTTGACAGGCAT 1159
||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||
Sbjct 1074 AGAAGATACCAACCCCTAACTGCAAT-GAACTTCAAGATCGTGGATTTGTTGACAGGCAA 1132
Query 1160 ATACCGATATGATACCAGCTCAGAACTTTCCAACATTCGCTGA-GACCTGCCAGATTTGG 1218
|||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||||| |
Sbjct 1133 ATACCGATATGATACCAGTTCAAAACTGTCCAACATTCGCTGAAGACCTGCCAGATTTTG 1192
Query 1219 ATGTTCCAGAGGTTCTTGGGCTG-CAAGTATAATCTGTAATGTGTGTAGGGAGGATAACA 1277
||||||||||||||||||||||| | |||||| | ||||||| || | ||||| || |
Sbjct 1193 ATGTTCCAGAGGTTCTTGGGCTGACC-GTATAAACAGTAATGTATGCAAGGAGGGTAGCT 1251
Query 1278 ATAGTCTCTTTTGTTTGGTT-CATATAGATTTGGAGATGATAATTCCTAGGTGAATATTG 1336
||| ||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||
Sbjct 1252 ATAATCTCTTTTGTTTG-TTGCATATAGAGTTGGAGATGATAATTCCTAGGAGAATATTG 1310
Query 1337 AGAACAACAAAGAA 1350
||||||||||||||
Sbjct 1311 AGAACAACAAAGAA 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5