BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49070.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494971 jgi|Araly1|494971|fgenesh2_kg.8__787__AT5G49070.1 2189 0.0
> Ahg494971 jgi|Araly1|494971|fgenesh2_kg.8__787__AT5G49070.1
Length=1380
Score = 2189 bits (1185), Expect = 0.0
Identities = 1297/1352 (96%), Gaps = 4/1352 (0%)
Strand=Plus/Plus
Query 46 TCAGAGCTGACAACACTTCTCAGCTCAGGTGTTTCTGTCTTTGAGATCTTTGCCGGTTTG 105
||||||||||| || |||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 31 TCAGAGCTGACGACGCTTCTCAGCTCAGGTGGTTCTGTCTTTGAGATCTTTGCCGCTTTG 90
Query 106 CTAGTAGTGCATCTGATCTACCAAAGAATTAGAACAAGAGTCAAAGTCTACTTACTTGAT 165
|||||| |||||||| |||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 91 CTAGTATTGCATCTGGCCTACCAAAGAATTAGAGCAAGCGTCAAAGTTTACTTACTTGAT 150
Query 166 TTCACTTGTTACCGGGCACCTGACTCAAACCGCGTCCCAATGTCAACTCTTATCGAAACC 225
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 TTCACTTGTTACCGAGCACCTGACTCAAACCGCGTCCCAATGTCAACTCTTATCGAAACC 210
Query 226 ATCTACCTCGATGACAAGCTTGATCAAGAGAGTATTGACTTCCAAGCCCGGATTCTTGAG 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 ATCTACCTCGATGACAAGCTTGATCAAGAGAGTATTGACTTCCAAGCCCGGATTCTTGAG 270
Query 286 AGGTCCTGGTTAAGCAACCAAACCAGTATTCCTCGTTCCCTGATGGAAATACCCCTCAAG 345
|||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 271 AGGTCCTGGTTAAGTAACCAAACCAGCATTCCTCCTTCCTTGATGGAAATACCCCTCAAG 330
Query 346 AAATCTCTCTCCTCGGTCAAAATAGAAACCATGACCACTATCTTCACCTCTGTTGAGGAT 405
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 331 AAATCTCTCTCCTCGGTCAAAATCGAAACCATGACCACTATCTTCACCTCTGTTGAGGAT 390
Query 406 CTCCTGAGGAAAAACAAACTAAGCCCAAGAAGCATAGACATACTGATAACAAACTGTAGT 465
||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 391 CTCCTGAAGAAAAACAAACTAAGCCCAAGAAGCATAGACATACTGATAACAAATTGCAGT 450
Query 466 TTGCATTCGCCTTCACCGTCTCTAAGTGCAATGGTGATCAACAAATTCCATATGAGAAGC 525
|||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 451 TTGCATTCTCCTTCACCGTCTTTAAGTGCAATGGTGATCAACAAATTCCACATGAGAAGC 510
Query 526 AATATCAAGAGCTTTAACCTGTCTGGGATGGGTTGTGCGGCTGGGATTCTATCAGTCA-A 584
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 511 AATATCAAGAGCTTTAACCTGTCCGGGATGGGTTGTGCGGCTGGGATTCTATCAGT-AGG 569
Query 585 TTTGGCTAATGATTTGCTACAGGCTCACCGAGGCTCATTGGCTCTTATTGTTAGCACCGA 644
|||||||||||| |||||| ||| ||||| |||||| |||||||||||||| ||||| ||
Sbjct 570 TTTGGCTAATGACTTGCTAAAGGTTCACCAAGGCTCCTTGGCTCTTATTGTAAGCACTGA 629
Query 645 AGCGCTGAACACACATTGGTACATTGGCAAAGACAGATCTATGCTTCTTACTAATTGTCT 704
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 630 AGCGCTGAACACACATTGGTACATTGGCAAAGACAGATCTATGCTTCTTACCAACTGTCT 689
Query 705 CTTCCGAATGGGAGCAGCTGCAGTTTTGATGTCTAGCAATGATCATGACAGAGACAATGC 764
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 690 CTTCCGAATGGGAGCAGCTGCAGTACTGATGTCGAGCAATGATCATGACAGAGACAATGC 749
Query 765 AAAGTATGAGCTCTTGCATGTTGTTAGAAAAAATAAAGCGAAAGATGATCGAGCTTACCG 824
|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct 750 AAAGTATGAGCTCTTGCATGTTGTCAGGAAAAATAAAGCGAAAGATGATCAAGCTTACCG 809
Query 825 ATGTATCTATCAAGACATAGACTCTGATGAAAAGCAAGGGGTGTCGATAACCAAAGATGT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 ATGTATCTATCAAGACATAGACTCTGATGAAAAGCAAGGGGTGTCGATAACCAAAGATGT 869
Query 885 AATCAGCGTTGCTGGGGATATGCTGAAGATGAATCTAACTTCACTGGGACCTCTGGTATT 944
||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 870 AATCAGCGTTGCTGGAGATATGCTGAAGATGAATCTAACTTCTCTGGGACCTTTGGTATT 929
Query 945 ACCTTACTTAGAGCAATTCCAATATGTGATACAACACATTCTTTGCAAGAAACTAAAGAT 1004
||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 930 ACCTTACCTAGAGCAATTCCAATATGTGATACGACAGATTCTTTGCAAGAAACTAAAGAT 989
Query 1005 CTATGAGTCGAATTCTTCTTATACACCAAACTTCAAGACAGCGTTTGAGCATTTCTGCAT 1064
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 CTATGAGTCGAGTTCTTCTTATACACCAAACTTCAAGACAGCGTTTGAGCATTTCTGCAT 1049
Query 1065 TCATACAGGAGGAAGAGCTGTAATTCAAGCAATGGAGATGAACCTGAAAC-TGACAAAAG 1123
||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 1050 TCATACAGGAGGAAGAGCTGTTATTCAAGCAATGGAGATGAACCTG-AACTTGACAAAAG 1108
Query 1124 TAGACATCGAGCCATCAAAGATGACTCTTCATAGGTTTGGGAATACTTCTTCGTCATCCA 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TAGACATCGAGCCATCAAAGATGACTCTTCATAGGTTTGGGAATACTTCTTCGTCATCCA 1168
Query 1184 TTTGGTACGCTCTCTCTTACTTGGAAGCAAAAAGGAGAATGAAAAAAGGCGATAGGGTCT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 TTTGGTACGCTCTCTCTTACTTGGAAGCAAAAAGGAGAATGAAAAAAGGCGATAGGGTCT 1228
Query 1244 TGCAGATTGCATTTGGAAGTGGGTTCAAGTGTAACAGTGCGGTGTGGAGATGCATCCGAA 1303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 TGCAGATTGCATTTGGAAGTGGGTTCAAGTGTAACAGTGCGGTGTGGAGATGCATCCGAG 1288
Query 1304 AAGTGGAGCCCAACACAGAAAACAAATGGCTCGACTTTATCGACTCATATCCTGTAGACG 1363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 AAGTGGAGCCCAATACAGAAAACAAATGGCTCGACTTTATCGACTCATATCCTGTAGACG 1348
Query 1364 TACCTGACTCTACAAATATCAGACCAGGCTAG 1395
||||||||||||| ||||||||| ||||||||
Sbjct 1349 TACCTGACTCTACGAATATCAGAACAGGCTAG 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5