BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49100.1
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949389 jgi|Araly1|949389|scaffold_801276.1 1834 0.0
Ahg478007 jgi|Araly1|478007|fgenesh2_kg.3__708__AT3G06868.1 193 5e-48
> Ahg949389 jgi|Araly1|949389|scaffold_801276.1
Length=1196
Score = 1834 bits (993), Expect = 0.0
Identities = 1163/1237 (94%), Gaps = 43/1237 (3%)
Strand=Plus/Plus
Query 202 GTTTTGGTTTTTGGTTATCAACAATGGTGGAAGCAAAAGATCAAGATATGGGTGATGGTA 261
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1 GTTTTGGTTTTTGGTTAT---CAATGGTGGAAGTGAAAGATCAAGATATGGGTGATGGTA 57
Query 262 TGCAATGTATAAACCATCCATTTACTAAAAACCCAGGTGGGATCTGTGCTTTTTGTCTTC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGCAATGTATAAACCATCCATTTACTAAAAACCCAGGTGGGATCTGTGCTTTTTGTCTTC 117
Query 322 AAGAAAAGCTTGGAAAGCTTGTAacttcatctttcccacttcctaaacacctcacttcct 381
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 118 AAGAAAAGCTTGGAAAGCTTGTAACTTCATCTTTCCCACTTCCTAAACACCTCTCTTCTT 177
Query 382 cttcaacttcttcttctccttccttcaGATCTGACTCTGTTGGTAGCACAACCACTGCCT 441
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 178 CTTCAACTTCTTCTTCTCCTTCCTTCAGATCTGACTCTGTTGGTAGTACAACCACTGCCT 237
Query 442 CTGCCGCAAAtctctcagcgtctctttctctctctgtctcCGGAGCAACAAACAACAACA 501
|||| || | ||| | |||| |||||| | |||||||||||||| | ||||||
Sbjct 238 CTGCAGC---T-TCT---C-TCTC--TCTCTC-C-GTCTCCGGAGCAAC--A-AACAAC- 281
Query 502 ACAGCAAGCTTCCGTTTTTGTTAGCTAAGAAGAAGAAGAAGATGCTTACTGCTTCTTCTT 561
| | |||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 282 A-A-CAAGCTTCCGTTTTTGCTAGCTAAGAAGAAGAAGAAGATGCTTACTG---CTTCTT 336
Query 562 CTTCTTCGACCACGGCTAATATTGTCTACAAGAGAAGTCAATCTACAAGGACTACGAAGA 621
||||| | |||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 337 CTTCTGCAACCACGGCGAATATTGTTTACAAGAGAAGTCAATCTACGAGGACTACGAAGA 396
Query 622 CAACGTACGGAGATTCAGATTTGAGCCCGAGAAAGAGAAATGGGTTTTGGTCCTTTTTTC 681
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |||
Sbjct 397 CAACGTACGGAGATTCAGATTTCAGTCCGAGAAAGAGAAATGGGTTTTGGTCGTTTCTTC 456
Query 682 ATCTCTACTCTTCGAAACAACATGGTAGCAGTAAGAAAGTTGGAAACTTTCATCAACCCA 741
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ATCTCTACTCTTCTAAACATCATGGTAGCAGTAAGAAAGTTGGAAACTTTCATCAACCCA 516
Query 742 TAAGCCAGACTGAGACAAAAACAGAGTTGGCAGAGACTACAACAGTGGGATCTTCGTCTT 801
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 517 TAAGCCAGACTGAGACAAAAACAGAGTTGACAGAGACTACAACAGTTGGATCTTCGTCTT 576
Query 802 CTTCGTCAGCTTCTTCTTCAATGTCAAAGAGAGTTGTTGGTGGTGGTGGGAGTAGTAGTA 861
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 577 CTTCGTCAGCTTCTTCTTCAATGTCAAAGAGA---GTT-GT--TGGTGGGAGTAGTAGTA 630
Query 862 ACAGAAACGGTATTGATGTGATTGTTGAAGAAGATGGAAGTCCTAACATTGAAGTCACAC 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 631 ACAGAAACGGTATTGATGTGATTGTTGAAGAAGATGGAAGTCCTAACATTGAAGTAACAC 690
Query 922 CAAGTGAGAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTG 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CAAGTGAGAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTG 750
Query 982 GTGATTTCTTTGAGAGGATCACAAATGGGTTTGGAGATTGTACTTTGAGAAGAGTTGAGT 1041
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 751 GTGATTTCTTTGAGAGGATAACTAATGGGTTTGGAGATTGTACTTTGAGAAGAGTTGAGT 810
Query 1042 CACAGAGAGAAGGTAATAATAACAAAGGTAACAAGGTCAGTAGTAACCCTAGTAATGGTG 1101
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 811 CACAGAGAGAAGGTAATAATAACAAAGGTAACAAGGTTAGTAGTAACCCTAGTAATGGTG 870
Query 1102 TTAGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGtcatcgt 1161
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TGAGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGT 930
Query 1162 cttcttcttcatcttcatcatcatgggtatcatcatcatcagctgaacatcatcatcatc 1221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 CTTCTTCTTCATCTTCATCATCATGGGTATCATCATCATCAGCTGAACATCATCATCAT- 989
Query 1222 ataatcataacatgggtcatGGTGGTGGAGGAAGGAACAGAAGCTGGGGATGGTCATTTG 1281
| | ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 990 A-A-TCATAACATGGGTCATGGTGG---AGGAAGGAACAGGAGCTGGGGATGGGCATTTG 1044
Query 1282 CAAGTCCAATGAGAGCTTTTACTTCTTCTTCTTAC-TCTGGTAAAAGAGGCCGTACAATT 1340
||||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||
Sbjct 1045 CAAGTCCAATGAGAGCTTTTAGTTCTTCTTCTT-CGTTTGGTAAAAGAGGCCGTACAATT 1103
Query 1341 TCAGATTCTACTACAAGCAAGAACACAACTCCAAACTTGGGTGCAATTCCTTCTTTGTTG 1400
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TCAGATTCTAC-A-A-GCAAGAACACAACTCCAAACTTGGGTGCAATTCCTTCTTTGTTG 1160
Query 1401 TCTGTCAGAAGCTGAATTAAT-AATAAACTTTGATCT 1436
||||||||||||||||| ||| || ||| ||||||||
Sbjct 1161 TCTGTCAGAAGCTGAATAAATTAA-AAAGTTTGATCT 1196
> Ahg478007 jgi|Araly1|478007|fgenesh2_kg.3__708__AT3G06868.1
Length=1477
Score = 193 bits (104), Expect = 5e-48
Identities = 214/265 (81%), Gaps = 16/265 (6%)
Strand=Plus/Plus
Query 929 GAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTGGTGATTT 988
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 801 GAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGAAGTAGAAGCTTCTCTGGTGATTT 860
Query 989 CTTTGAGAGGATCACAAATGGGTTTGGAGATTGTACTTTGAGAAG-AGTTGAGTCACAGA 1047
||||||||||||| | ||||||||||| |||||| | |||||||| | ||||||||||||
Sbjct 861 CTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAGGA-TTGAGTCACAGA 919
Query 1048 GAGAAGGTAATAATAACAA-AGGTAACAA-GGTCAGTAGT-AACCCTAGTAA-TG-G-TG 1101
|||||| | || || || ||| ||| || || || | || || || | ||
Sbjct 920 GAGAAGCCACCAAGGTCATTAG-TAATGGTGGTG-GTGGTGAAGC--AGCAAATGCGATG 975
Query 1102 T-TAGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGtcatcg 1160
| || | ||||| | ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 976 AAT-GA-A-ATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGATAATGACACCATCA 1032
Query 1161 tcttcttcttcatcttcatcatcat 1185
||| | || ||||| || ||||||
Sbjct 1033 TCTACATCATCATCAACAACATCAT 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5