BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49110.2
Length=4413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949390 jgi|Araly1|949390|scaffold_801277.1 5681 0.0
> Ahg949390 jgi|Araly1|949390|scaffold_801277.1
Length=4393
Score = 5681 bits (3076), Expect = 0.0
Identities = 3590/3837 (94%), Gaps = 40/3837 (1%)
Strand=Plus/Plus
Query 1 ATGACCGTCGCCGCCGCAGCCGAAGAACC-ATCTCAGAGACCTCTCACCGACAAAGATAT 59
|||||||||| |||||| ||||||||||| | ||||||||||| |||||||||| ||| |
Sbjct 21 ATGACCGTCGTCGCCGCCGCCGAAGAACCGA-CTCAGAGACCTTTCACCGACAACGATGT 79
Query 60 CATTCGTTTAGCACAGTACCACCATTGTCAAACCGGATTCTCTCTCCCACCTTACCTTCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 CATTCGTTTAGCACAGTACCACCATTGTCAAACCGGATTCTCTCTCCCACCTTACCTTCT 139
Query 120 CTCACCGTCTTCCCACGATTCCCTTCTCTCATACCTCAAATCTCGCTCTTCTTCACCATC 179
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 140 CTCACCATCTTCCCACGATTCTCTTCTCTCATACCTCAAATCTCGCTCTTCTTCACCATC 199
Query 180 TCCGTCGAAACAAGTTTCTGAGTATGTAATCGctcttctatctctaatatctctctcccc 239
||||||||||| |||||||||||| || |||||||||||||||||||| || ||||| ||
Sbjct 200 TCCGTCGAAACCAGTTTCTGAGTACGTGATCGCTCTTCTATCTCTAATTTCACTCTCTCC 259
Query 240 tactactccctctctct-gctctctcctcgcttctcttctcatctcctACACCCAAATCT 298
| |||||| ||||||| | ||||||||||| |||||||||||||||||||| |||||||
Sbjct 260 GAGTACTCCGTCTCTCTCG-TCTCTCCTCGCCTCTCTTCTCATCTCCTACACACAAATCT 318
Query 299 TCAATTCCTGCAAAATCCCAAGCGATTCTGATTCTCTCAAGACGATTCAGCTCTTCGGTA 358
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 319 TCAATTCCGGCAAAATCCCAAGCGATTCGGATTCTCTCAAGACGATTCAGCTCTTCGGTA 378
Query 359 CTCTCTTACGATACTTACACGTTAAGGAGGTGAAATCTGTAGTTGATTCGATCTTATCAG 418
||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 379 CTCTCTTACGACACTTACACGTTAAGGAGGTGAAATTTGTAGTCGATTCGATCTTATTAG 438
Query 419 GTGTGACTAGAGTTATCACTGTTGATGAAGCCCAGGTGTTCGATTTATTGCCTGTGTGCT 478
||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||
Sbjct 439 GTGTGTCTAGAGTTATCACTGTTGATGAAGCCCAGTTGTTTGATTTATTGCTTGTGTGCT 498
Query 479 TTGATTTATTGCG---T---AGAGAAGGTAAAGCTAGTGAAATCGATTTCGTTAATTCGG 532
||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 499 TTGATTTATTGCGGAATTCGAGAGAAGCTAAAGCTAGTGAAATCGATTTCGTTAATTCGG 558
Query 533 CGATTGATCGTGTTCTTAGTTGTGAATGGAACAAAGCGTTGTTGACGAAAATGGTTTCTC 592
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 559 CGATTGATCGTGTTCTTAGTTGTGAATGGAGTAAAGGGTTGTTGACGAAAATGGTATCTC 618
Query 593 TTGCAAAGGAGTTTTCATTTCTGGATAAAGGGAGAAAAAGTGAATTGGTAGAGAAAGTGT 652
| || ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 619 TAGCTAAGGAGTTTTCGTTTCTGGATAAAGGGAGAAAGAGTGAATTGGTGGAGAAAGTGT 678
Query 653 TTGTTGGTATTAAGTTGATAGACTTGCAGGATTTGCCTTCACTTGTGTATCAATTGTTGG 712
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TTCTTGGTATTAAGTTGATAGACTTGCAGGATTTGCCTTCACTTGTGTATCAATTGTTGG 738
Query 713 TTCTTGCCTCTAAAGGTTTTTGCAAGAGGGAAGTGATTGGTGGTGTTGTTGGTTACTTTG 772
||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 739 TTCTTGCTTCTAAAGGTTTTTGCAAGAGGGAAGTGATTGGAGGTGTTGTTGGTTTTTTTG 798
Query 773 GGTCTAAAGCTGAGACTAGAGTAGCTTCCGTTGTTAGACAGATAGAAGGAACAGTTCTTC 832
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 799 GATCTAAAGCTGAGACTAGAGTAGCTTCTGTTGTTAGACAGATAGAAGGAACTGTTCTTC 858
Query 833 TTCATGTGAATTTTGCTGTGAAGCAGGATCCTTCATTGGGGCAAGAGGTTGTGGCGTTAG 892
||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 859 TTCATGTGAATTTCGCAGTGAAGCAGGATCCTTCATTGGGGCTAGAGGTTGTGGCGTTAG 918
Query 893 TCAAATCTGATCTTAGAGCTTTCAATCATTTTACAGTCGCGGTTCTGTTTTCCGTTGCTC 952
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 919 TCAAATCTGATCTTAGAGCTTTCAATCATTTTACAGTTGCGGTTCTGTTTTCGGTTGCTC 978
Query 953 GGGTTAGAAAATTCGGTGAGAGCTCCTTGGGGATGTTGAGAACGGCTTTGCTTACTGCGT 1012
|||||||||| || ||||||| ||||| ||||| ||||||||||||||||||| |||||
Sbjct 979 GGGTTAGAAAGTTTGGTGAGAATTCCTTAGGGATTTTGAGAACGGCTTTGCTTAATGCGT 1038
Query 1013 ACAATGATTA-CAGACTCTCCAAAGATTGCAAGTGGCTACCTGTTGAGCTTAAGGAAGAG 1071
|||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1039 ACAATGATTATC-GACTCTCCAAAGATTGCAAGTGGCTACCTGATGAGCTTAAGGAAGAC 1097
Query 1072 AGTTTCCTGCATGCCAAATTGGTTGAAAAATCTTTGCTAAGAGCGGTTAGTGAGTGCCGA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1098 AGTTTCCTGCATGCCAAATTGGTTGAAAAATCTTTGCTAAGAGCGGTTAGTGAGTGCAGA 1157
Query 1132 TATGGGAGAGAGCATGTGGTTCCAAGTGTTATTCAGTTTGGCTTTATGTTGCTAGAATCT 1191
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1158 TATGGGAGAGAGCATGTGGTTCCAAGTGTTATCCAGTTTGGATTTATGTTGCTAGAATCT 1217
Query 1192 GTTGAAGAAGGTAGATCCAATGAGTTTGGTGATTCGAAAGGTGTACTCGGTATTGAGAAG 1251
|| |||||| ||||||||||||||||||||||||| || |||||| | ||||||||||||
Sbjct 1218 GTCGAAGAAAGTAGATCCAATGAGTTTGGTGATTCTAATGGTGTATTGGGTATTGAGAAG 1277
Query 1252 CTTAGCATTCAGATTCTGGGAACCCTATTTGAAGTCCATGATATGACGAGAAACGAGATA 1311
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1278 CTTAGCATTCAGATTTTGGGAACCCTATTTGAAGTCCATGATATGACAAGAAACGAGATA 1337
Query 1312 ATTGAGCAATGCAAATTTCGCATTCTTTCTTTGAAATGCGCAAAGAGCAAGCCAATAGTA 1371
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 ATTGAGCAATGCAAGTTTCGCATTCTTTCTTTGAAATGCGCAAAGAGCAAGCCAATAGTA 1397
Query 1372 AGGTTGTTAGGGTATCTTGTCCAGAGATACTCACTTATCATGTTGGAATTTGTCCACCAT 1431
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 AGGTTGTTAAGGTATCTTGTCCAGAGATACTCACTTATCATGTTGGAATTTGTCCACCAT 1457
Query 1432 CTCAAAGAGTTATTGGATTATTTCACTTTCATGGAGGGACATATCAGCTGTTTTCTTGTT 1491
|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1458 CTCAAAGAGTTATTGGGTTATTTCACTTTCATGGAGGGAAATATCAGCTGTCTTCTTGTT 1517
Query 1492 TCTGCTGTTATCCCGCTCATCAAATTCAGCCGTGATCTTCAGGACTACACCATCTTGGTG 1551
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 1518 TCTGCTGTTATCCCGCTCATCAAATTCAGCCATGACCTTCAGGACTATACCATCTTGGTG 1577
Query 1552 ATTCGCAAAGCTATGTTTAGACGGGAAGATACAGTTCGTGTTGCAGCAACCAAAG-TAAT 1610
|||||||| |||||||||||||| ||| ||||||||||||||||||| || |||| | ||
Sbjct 1578 ATTCGCAAGGCTATGTTTAGACGCGAATATACAGTTCGTGTTGCAGCGAC-AAAGGTTAT 1636
Query 1611 AACTGATCTTATACTTGCAGAGAAACTAGCTAAGAGAGACAGCTCATTTACTTTCCAAGA 1670
|||||||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||
Sbjct 1637 AACTGATCTTATACTTGCAGAGAAACAAGCTAAGAGAGACGGTTCATTTACTTTACAAGA 1696
Query 1671 CTCAGCAAGCCAAGCCAGTTCCAGTCAGCAGACTGAGATGAGCTGTATTGTGAGGGGAAA 1730
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1697 CTCATCAAGCCAAGCCAGTTCCAGTCAGCAGACTGAGATGAGCTGTATAGTGAGGGGAAA 1756
Query 1731 CCTCTTTACTGAACTGAATGGGTTGCTTCAAAGATGTCTTTACCAGCAGGCAAGAGTGAA 1790
|||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1757 CCTCTTCACTGAACTGAATGGGTTGCTTCAAAGATGTCTTTACCAACAGGCATTAGTGAA 1816
Query 1791 GGAAGTAGTTTATGATGGGCTTGTGAAGTTAGTCCTGATTGATCCATCAAGTGGAGGACA 1850
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1817 GGAAGTAGTTTATGATGGGCTTGTGAAGTTAGTCTTGATTGATCCATCAACTGGAGGACA 1876
Query 1851 TGTGTTGGACTTTCTTATGCCTCATTTTCTTCGTTTCTTCGGACAGGACACAGATTTTCA 1910
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1877 TGTGTTGGACTTTCTTATGCCTCACTTTCTTCGTTTCTTCAGACAGGACACAGATTTTCA 1936
Query 1911 ACTTGGAATCACTTCATGCATTAGAGTAGAAGGTG-ACAAATTTA-CTATTGAAGAGCCC 1968
|| ||||||| ||||||||||| | ||||||||| | |||| || | ||||||||||||
Sbjct 1937 GCTCGGAATCATTTCATGCATTAAATTAGAAGGTGGA-AAATATATC-ATTGAAGAGCCC 1994
Query 1969 TTGGATAGGCTTCTCTTTTGTGTCTCTTGGATTTTACTTCTCCAGCAGCAAAACAGCTCT 2028
||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||
Sbjct 1995 TTGGATAGGCTTCTCTTTTGTATCTCTTGGATTTTACTCCTCCAGGTGCACAACAGCTCG 2054
Query 2029 GATCGGCCTTCCGATGCTGCGTGGCCATGCTTTGGTTTCTCCCTTTCACAAGATAATGAG 2088
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2055 GATCGGCCTTCCGATGCCGCGTGGCCATGCTTTGGTTTCTCACTTTCACAAGATAATGAG 2114
Query 2089 CAGCAGGTTGGAAGAAACCTATCTCATGAAGCGTACTCCAGTGCTTTGGTAAAGATCCGA 2148
||| || ||| ||||| |||||||||||| ||||||| ||||||||| |||||||||
Sbjct 2115 CAG--GGAGGGA-GAAACATATCTCATGAAGTTTACTCCAATGCTTTGGTGAAGATCCGA 2171
Query 2149 AGCTTCTTACTAGGCAAGAAGTTAGGAGATATTGTAGGGCAGTCTCAGGACACAGTTTCT 2208
| |||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 2172 AACTTCTTACTAGGCAAGAATTTAGAAGATATTGTTGGGCAGTCTCAGGACACAGTTTCC 2231
Query 2209 GCATCTCTCGAAGAAGATAAAAGAAAATCCTATTGTTTGATTATATTGGGAATCGTTCAA 2268
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2232 GCATCTCTAGAAGACGATAAAAGAAAATCCTATTGTTTGATTATATTGGGAATCATTCAA 2291
Query 2269 GTGCTGCTAAATTATATTATAGTGGATCTAGAGAAACAGCCAGAAGGGAAAAAGGGTTCT 2328
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 2292 GTGCAGCTAAATTATATTATAGTGGATCTAGAGAAACAGCCTGAAGGGAAAAAGGGTGCT 2351
Query 2329 GTCAGAAAGGAGATTGTCGACTTAATTGATCTTTATGAATCACTGGAAAAGGATGTGGGA 2388
|||||||| ||||||||||| || |||||||||||||||||||||||||| || |||||
Sbjct 2352 GTCAGAAAAGAGATTGTCGATTTGATTGATCTTTATGAATCACTGGAAAAAGACGTGGGG 2411
Query 2389 AAATCGAAGCAGAGCAATGTTGGCAAGAGAGTACGATTTAGCGCCTGTAATGATACTGAT 2448
|||| || | ||||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 2412 AAATTAAAACCGAGCAATATTGGCAAGAGGGTACGATTTAGCACCTGTAATGATACTGAT 2471
Query 2449 -CTGGGAAACACGAGTATCAATGAAGAGCGAGAGAAAGTTCCCTTTTTGGCTACTTCAAG 2507
| ||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct 2472 GC-GGGAAACACAAGTATCAGTGAAGAGCGAGAAAAAGTTCCCTTTTTGGCAACTTCAAG 2530
Query 2508 TATCTACCAGCTATTTCTACTCAGTTTCAAACTCTATAGCAGCAAATCCGTTGGTACTCA 2567
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2531 TATCTACCAGCTATTTCTTCTTAGTTTCAAACTCTATAGCAGCAAATCCGTTGGTACTCT 2590
Query 2568 GTCAGGCTCGCAGGATCACAGCCATTCATCACCAGCGAAGACAGAAAAATCAATTT-T-- 2624
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 2591 TTCAGGTTCGCAGGATCACAGCCAGTCATCACCAGCCAAGACAGAAAAATCAATTTCTAA 2650
Query 2625 ------CTCCTTCACTTTGCATGTTTGTGTTGGGCACATAA-ATTCATCTCTTTGCATGA 2677
||||||||||||||| || |||||||||||||||| || |||||||||||||||
Sbjct 2651 AATTTTCTCCTTCACTTTGCAAGTGTGTGTTGGGCACATAAGAT-CATCTCTTTGCATGA 2709
Query 2678 AGGAGGAAAATCCACTTAAACCGTTGGTCTGTGGTGACATGAAGGTTCTGGGTCCTCCAC 2737
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2710 AGGAGGAAAATCCACTTAAACCGTTGGTCTGTGGTGACATGAAAGTTCTGGGTCCTCCAC 2769
Query 2738 TGCTAAAAGTAGTTTACCTGCTAAAGCCAGAGCCACCTCTAGCTACTGGACAGACGAATA 2797
||||||||||| ||||||||||||||||||| ||||||||||| || |||||||| || |
Sbjct 2770 TGCTAAAAGTACTTTACCTGCTAAAGCCAGATCCACCTCTAGCGACCGGACAGACCAAGA 2829
Query 2798 AGGAGAAG-AAAGGAAGGAAAGATGTTGACGGAAGAAAACAGTGTCTACATCTGGCCTTA 2856
|||| | | ||||||| ||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 2830 AGGACA-GTAAAGGAAAGAAGGATGCTGAAGGAAGAAAACAGTGTCTACATCTGGCCTTA 2888
Query 2857 CTTAGCTTGAAAGAGCTACTCAATATATATTCAAGTGGATCTGGTTTGACTGGCTTGCTT 2916
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2889 CTTAGCTTGAAAGAGCTGCTCAATATATATTCAAGTGGATCTGGTTTGACTGGCTTGCTT 2948
Query 2917 GAAGATTTGTTGGCAGTACCTGCATCCGAGGATGCTACTTTAGAAGAGTGCAGGGAAGCT 2976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2949 GAAGATTTGTTGGCAGTACCTGCATCCGAGGATGCTACTTTAGAAGAGTGCAGGGAAGCT 3008
Query 2977 TCAAAAATTGAAGATCCACTTATAAAGAGCATCGAAATTTTCATGGCGAAAATCATGAAG 3036
|||| ||||||||| |||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 3009 TCAAGAATTGAAGACCCACTTGTAAAGGGCATCGAAATTTTCATGGAGAAAATCATGAAG 3068
Query 3037 CCCATGATCACAGACTTTATCGCGCAAAACTCTAATGACGTAGAGGAAGCTAAGACCATA 3096
||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 3069 CCCATGATCACGGACTTTATCGCGCAAAACTCTAATGATGTAGAGGAAGCTAATACTATA 3128
Query 3097 ATATTCAATTGCACTGTTCAGATTCTTTGTGAC-ATAATGTTGAAGCTTGGGAACAATCT 3155
|||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 3129 ATATTCAATTGCGCTGTTCAGATTCTTTGTG-CTATAATGTTGAAGCTTGGGAACAATCT 3187
Query 3156 ACCAGACAAATTCAAACAAAGGCATGGATCATGGGCTCATCAAATCTGCAGAAGCTGTGA 3215
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3188 ACCAGACAAATCCAAACAAAGGCATGGATCATGGGCTCATCAAATGTGCAGAAGCTGTGA 3247
Query 3216 AACATCTAACACCACTGTGGCAAAGAGCGTTCTGAAACTTGCCATCTCTTTTACTACATC 3275
|||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||
Sbjct 3248 AACATCTAACACCACTGTGGCAAAGAGCATTGTGAAACTTGCCATCTCTTTTACCACATC 3307
Query 3276 CCCTGGTGATCTATGCATAGCCGTGGAAGTGGCTCAGGAGTTGCAAAATATCATGGGTTT 3335
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 3308 ACCTGGTGATCTATGCATAGCCGTTGAAGTGGCTAAGGAGTTGCAAAATATCATGGGTTT 3367
Query 3336 AGACAAATCTGATACGTTAGAAGTGTCTGAGTCATACATGGTCATAAACCAGTCAACTAG 3395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3368 AGACAAATCTGATACGTTAGAAGTGTCTGAGTCATACATGGTCATAAACCAGTCAACTAG 3427
Query 3396 TGCTTCCGTAACTTCTTGTATATTACAGTCTATTGATTCAGCAATAGTTGACATGGATTG 3455
|||||| ||||||||||| ||||| || || | |||||||||||||||||| ||||||||
Sbjct 3428 TGCTTCTGTAACTTCTTGCATATTGCAATCAACTGATTCAGCAATAGTTGAAATGGATTG 3487
Query 3456 GGCCACAAAGAAGCTAAAGAACTTT-TATGTGGTCTCTCAAAAGAACATCCATCTCAGCG 3514
||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| ||
Sbjct 3488 GGCCACAAAGAAGCTAAAGAA-TTTCTATGTGGTCTCTCAGAAGAACATCCATCTCAACG 3546
Query 3515 ATGATACTGAGAGCACAGTCGGGTCGGTTCTCGAGGAAGCCCTTTACTCAATGGCTGAGT 3574
|||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3547 ATGAAACTGAGAGTACAGTCGGGTTGGTTCTCGAGGAAGCCCTTTACTCAATGGCTGAGT 3606
Query 3575 CAACAGTCAGAATACTTTCTTCCTTTGTTTTGATGAACCTCAAAGAGTCGCAAGCAGCGC 3634
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 3607 CAACAGTCAGAATACTTTCTTCCTTTGTGTTGATGAACCTCAAAGACTCGCAAGCAGCGC 3666
Query 3635 AGTTTCTTAGACTAGCAGTTAGGTTTTATAAACAATTGGCACAAATTGTGAAGCTGAGGA 3694
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3667 AGTTTCTTAGACTAGCAGTTAGGTTTTACAAACAATTGGCACAAATTGTGAAGCTGAGGA 3726
Query 3695 TTGCTCCCAAGGGTTGCAAGCAAATTCTTCCTAGCCTTAAATTTCAAAAACTCGTGGAAC 3754
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 3727 TTGCTCCCAAGGGCTGCAAGCAAATTCTTCCCAGCCTTAAATTTCAAAAACTGGTGGAAC 3786
Query 3755 TGACTTGCAAGAGTCTCACGGTTCCTTTATATCCCTTTTTATCTGAAATGCAAAAGG 3811
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3787 TAACTTGCAAGAGTCTCACAGTTCCTTTATATCCCTTTTTATCTGAAATGCAAAAGG 3843
Score = 776 bits (420), Expect = 0.0
Identities = 499/535 (93%), Gaps = 13/535 (2%)
Strand=Plus/Plus
Query 3890 AGGAACAACAAGAAAGTGTGAG-TCACAATTCCAAGGGAATAATCAATAAGATCAAACAG 3948
|||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 3841 AGGAACAACAAGAAAGTGTGAGTTC-CAATTCCAAGGGCATAATCAATAAGATCAAACAG 3899
Query 3949 GAGAACAAATGCATTCCTGATTTGATATTCCAGATAGAAGACTGTGAAAGATACCTAATT 4008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3900 GAGAACAAATGCATTCCTGATTTGATATTCCAGATAGAAGACTGTGAAAGATACCTAATT 3959
Query 4009 CAGCTAAGCAAAGTTACTAAATTGAATTTGTTGAGGCATGCCAAGCGCAGCACTGCCAGA 4068
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3960 CAGCTAAGCAAAGTTACTAAATTGAATTTGTTGAGGCATGCCAAGCGCAGCACCGCCAGA 4019
Query 4069 GACTTCAAAATAATTGAAGATTCAGACCCTCCTGCAGGAGGCGAAGATGGAGGAAACCAG 4128
||||| ||||||||||||||| |||| ||||||||||||| |||||||| |||||||||
Sbjct 4020 GACTTTAAAATAATTGAAGATGCAGAACCTCCTGCAGGAGATGAAGATGGTGGAAACCAG 4079
Query 4129 GAAGAAGAGACAGAGACACAGAACAATAA-TATTGGC------GAGGATGATTTAAGACA 4181
|| ||||||||||||| ||||| |||||| | ||||| |||||||||||||||||
Sbjct 4080 GAGGAAGAGACAGAGATACAGAGCAATAACT-TTGGCATTAACGAGGATGATTTAAGACA 4138
Query 4182 AGAGTCAGATGATGATGGTTCAGAAGAAATGTTGTCCCCCCGAAATGCTAGTTCAGTATC 4241
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 4139 AGAGTCAGATGATGATGGTTCAGAAGAAATGTTGTCTCCCCGAAATGCTAGTTCCGTATC 4198
Query 4242 ATCACCAGGATTAGATTCTGATAAAACAATAGCAGCAGCAACagaagaggacgatgaaga 4301
|||||| || ||||||||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct 4199 ATCACCGGGCTTAGATTCTGATAAAGCAATAGCAGCAGAAACAGAAGAGGACGACGAAGA 4258
Query 4302 agaaca--a-gaacaagatgaaggagaagaagaaagTGGCGATAATCGTCCTAAAAAGAT 4358
|||| | | |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 4259 AGAAAAGGAAGAACAAGAAGAAGGAAAAGAAGAAAGTGGCGATAATCGTCCTAAAAAGAT 4318
Query 4359 GGCTAGGAAGAGTTGGGTTGTGGAAGATTCTGATGAAGATTCTGAAACATTTTAG 4413
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4319 GGCTAAGAAGAGCTGGGTTGTGGAAGATTCTGATGAAGATTCTGAAACATTTTAG 4373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166920515178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5