BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49120.1
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494976 jgi|Araly1|494976|fgenesh2_kg.8__792__AT5G49120.1 819 0.0
Ahg497299 jgi|Araly1|497299|fgenesh2_kg.167__1__AT5G49120.1 695 0.0
> Ahg494976 jgi|Araly1|494976|fgenesh2_kg.8__792__AT5G49120.1
Length=644
Score = 819 bits (443), Expect = 0.0
Identities = 520/556 (94%), Gaps = 10/556 (2%)
Strand=Plus/Plus
Query 134 aacaacaacaacaaAAACCCTC-TTAGTGAAGGTGTCTT-A--ATTAGTCCTAAAGTCGT 189
|||||||||||| || || ||| ||||| |||| ||| | |||||||||||||||||
Sbjct 93 AACAACAACAAC-AACACTCTCAACAGTGACGGTGGCTTAATTATTAGTCCTAAAGTCGT 151
Query 190 CAACAAAGCCAACATTATTGTCACCACCGCCGTGACGACGGACACGACTAATCTCCGTCG 249
||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 152 CAACAAAGCCAACGTTATCGTCACCACCACCGTGACGACGGACACGACTAATCTCCGTCG 211
Query 250 TTGTTATCAAGATTCTGGATTTCTCGAACATTGTTTTCTCTGTAGACGAAAACTTCTTCC 309
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 212 TTGTTATCAAGATTCTGGATTTCTCGAACATTGTTTTCTCTGTAGAAGAAAACTTCTTCC 271
Query 310 AGCGAAAGATATCTACATGTATAAAGGTGATAGAGCGTTTTGTAGCGTGGAGTGTAGATC 369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TGCGAAAGATATCTACATGTATAAAGGTGATAGAGCGTTTTGTAGCGTGGAGTGTAGATC 331
Query 370 GAAGCAGATGATTATGGACGAAGAAGAAAGCTTGAGAAGAGAGTATTGTTCTTTAATGGA 429
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 332 GAAGCAGATGATTATGGACGAAGAAGAAAGTTTGAGAAGAGAGTATTGTTCGTTAATGGA 391
Query 430 TGTTAAGAAGAAGAAATTTGATTCTCCGGCGACTGCGCCGTCGCGTTACCGTCGAGATCC 489
||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 392 TGTTAAGAAGAAGAAATCTGAATCTCCGGCGACGGCGCCGTCGCGTTACCGCCGAGATCC 451
Query 490 GAGAAACCAAGCAGGCGGTTTCGCTTACTGAAGCAGAGAGAATCGCAAAAACTGAAAAC- 548
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 452 GAGAAACCTAGCAGGCGGTTTCGCTTACTGAAGCAGAGAGAATCGCAAAGACTGAAAAAG 511
Query 549 TTATGTT-TTGTTGACTTTGTTACCCTTTGGCTAATTTTTGTCGTTTTGTTTAATAACGT 607
|| ||| || |||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 512 TTGTGTGGTT-TTGACTTTTTTACCCTTAGGCTAAGTTTTGTCGTTTTGTTTAATAACGT 570
Query 608 GTAAAGCCGAAAGGGTGTTTTGGGTATTTCAGAGCTTTCTTTTTGCATATCTATGGGAGC 667
|||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 571 GTAAAGCCGAGAGGGTGTTTTGGGTATTTCAGAGCTTT-TTTT-GCATATCTATGGGAGC 628
Query 668 CCCTAGTAAAATATTT 683
||||||||||||||||
Sbjct 629 CCCTAGTAAAATATTT 644
Score = 150 bits (81), Expect = 1e-35
Identities = 100/108 (93%), Gaps = 6/108 (6%)
Strand=Plus/Plus
Query 15 CTTCTTTTCGCTATTAACACCTGAAAGAAATGAGATAGGAGAGAAC---a--aaaaa-aa 68
||||||||||| ||||||||||||||||||||||||| |||||||| | ||||| ||
Sbjct 1 CTTCTTTTCGCCATTAACACCTGAAAGAAATGAGATAAGAGAGAACAAAACCAAAAATAA 60
Query 69 TGGTGGGACTAAGTATTGTTTTGGAGATGACTaacaacaacaacaaca 116
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGTGGGACTAAGTATTGTTTTGGAGATGACTAACAACAACAACAACA 108
> Ahg497299 jgi|Araly1|497299|fgenesh2_kg.167__1__AT5G49120.1
Length=569
Score = 695 bits (376), Expect = 0.0
Identities = 446/479 (93%), Gaps = 8/479 (2%)
Strand=Plus/Plus
Query 134 aacaacaacaacaaAAACCCTC-TTAGTGAAGGTGTCTT-A--ATTAGTCCTAAAGTCGT 189
|||||||||||| || || ||| ||||| |||| ||| | |||||||||||||||||
Sbjct 93 AACAACAACAAC-AACACTCTCAACAGTGACGGTGGCTTAATTATTAGTCCTAAAGTCGT 151
Query 190 CAACAAAGCCAACATTATTGTCACCACCGCCGTGACGACGGACACGACTAATCTCCGTCG 249
||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 152 CAACAAAGCCAACGTTATCGTCACCACCACCGTGACGACGGACACGACTAATCTCCGTCG 211
Query 250 TTGTTATCAAGATTCTGGATTTCTCGAACATTGTTTTCTCTGTAGACGAAAACTTCTTCC 309
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 212 TTGTTATCAAGATTCTGGATTTCTCGAACATTGTTTTCTCTGTAGAAGAAAACTTCTTCC 271
Query 310 AGCGAAAGATATCTACATGTATAAAGGTGATAGAGCGTTTTGTAGCGTGGAGTGTAGATC 369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TGCGAAAGATATCTACATGTATAAAGGTGATAGAGCGTTTTGTAGCGTGGAGTGTAGATC 331
Query 370 GAAGCAGATGATTATGGACGAAGAAGAAAGCTTGAGAAGAGAGTATTGTTCTTTAATGGA 429
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 332 GAAGCAGATGATTATGGACGAAGAAGAAAGTTTGAGAAGAGAGTATTGTTCGTTAATGGA 391
Query 430 TGTTAAGAAGAAGAAATTTGATTCTCCGGCGACTGCGCCGTCGCGTTACCGTCGAGATCC 489
||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 392 TGTTAAGAAGAAGAAATCTGAATCTCCGGCGACGGCGCCGTCGCGTTACCGCCGAGATCC 451
Query 490 GAGAAACCAAGCAGGCGGTTTCGCTTACTGAAGCAGAGAGAATCGCAAAAACTGAAAAC- 548
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 452 GAGAAACCTAGCAGGCGGTTTCGCTTACTGAAGCAGAGAGAATCGCAAAGACTGAAAAAG 511
Query 549 TTATGTT-TTGTTGACTTTGTTACCCTTTGGCTAATTTTTGTCGTTTTGTTTAATAACG 606
|| ||| || |||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 512 TTGTGTGGTT-TTGACTTTTTTACCCTTAGGCTAAGTTTTGTCGTTTTGTTTAATAACG 569
Score = 150 bits (81), Expect = 1e-35
Identities = 100/108 (93%), Gaps = 6/108 (6%)
Strand=Plus/Plus
Query 15 CTTCTTTTCGCTATTAACACCTGAAAGAAATGAGATAGGAGAGAAC---a--aaaaa-aa 68
||||||||||| ||||||||||||||||||||||||| |||||||| | ||||| ||
Sbjct 1 CTTCTTTTCGCCATTAACACCTGAAAGAAATGAGATAAGAGAGAACAAAACCAAAAATAA 60
Query 69 TGGTGGGACTAAGTATTGTTTTGGAGATGACTaacaacaacaacaaca 116
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGTGGGACTAAGTATTGTTTTGGAGATGACTAACAACAACAACAACA 108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25504231473
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5