BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49130.1
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916473 jgi|Araly1|916473|Al_scaffold_0008_1224 2296 0.0
Ahg943270 jgi|Araly1|943270|scaffold_603814.1 62.1 1e-08
Ahg925173 jgi|Araly1|925173|scaffold_200734.1 58.4 2e-07
> Ahg916473 jgi|Araly1|916473|Al_scaffold_0008_1224
Length=1506
Score = 2296 bits (1243), Expect = 0.0
Identities = 1422/1510 (94%), Gaps = 5/1510 (0%)
Strand=Plus/Plus
Query 33 ATGGTGGTCGAAGAAGATTCACGTCTCATAAATCTCCAACACAAGTACAACCCGACAATG 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTCGAAGAAGATTCACGTCTCATAAATCTCCAACACAAGTACAACCCGACAATG 60
Query 93 CCCGAGGTGGTGGAGGAGCTGAAGAGAATTTGGGACATAAGTTTTCCGGTGGCCGCCATG 152
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CCCGAGGTGGTGGAGGAGATGAAGAGAATTTGGGACATAAGTTTCCCGGTGGCCGCCATG 120
Query 153 AGCATATTAAACTACCTAAAGAACATGACATCCGTCGTGTGTATGGGACGACTCGGTAGC 212
|||||| |||||||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 121 AGCATACTAAACTACCTAAAGAACATGACCTCCGTCGTGTGTATGGGCCGTCTTGGTAGC 180
Query 213 CTTGAGCTCGCAGGAGGAGCCTTAGCCATCGGTTTCACCAACATCACCGGTTACTCCGTC 272
|| |||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 181 CTCGAGCTCGCAGGAGGTGCCTTAGCCGTCGGTTTTACCAACATAACCGGTTACTCCGTC 240
Query 273 CTCTCTGGTTTAGCCACCGGTATGGAACCATTATGTGGTCAAGCCATCGGTTCTAAAAAC 332
||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 241 CTCTCCGGTTTAGCCACCGGTATGGAACCACTATGTGGTCAAGCCATCGGTTCCAAAAAC 300
Query 333 CCTTCACTCGCTTCCTTAACCCTCAAGCGAACCATCTTCCTCCTTCTCTTAGCTTCTCTT 392
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 301 CCTTCACTAGCTTCCTTAACCCTCAAGCGAACCATATTTCTCCTTCTCTTAGCTTCTCTT 360
Query 393 CCCATATCACTCCTTTGGCTAAACCTCGCGCCTCTAATGCTGATGCTCCGCCAACAACAT 452
||||| ||||| || |||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 361 CCCATCTCACTTCTCTGGCTAAATCTCACGCCTCTAATGCTAATGCTCCGCCAACAACAA 420
Query 453 GATATCACTCGTGTCGCATCTCTCTATTGTTCCTTCTCTTTGCCTGATCTTCTCGCTAAT 512
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 421 GATATCACACGTGTCGCATCTCTCTATTGCTCCTTCTCTTTGCCTGATCTTCTTGCTAAT 480
Query 513 AGTTTCCTTCATCCTTTACGTATTTACTTACGTTGTAAAGGCACCACTTGGCCTTTGATG 572
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCTTCCTTCACCCTTTACGTATTTACTTACGTTGTAAAGGCACCACTTGGCCTTTGATG 540
Query 573 TGGTGCACGTTAGTCTCCGTCCTTCTTCATCTTCCCATTACTGCTTTCTTCACGTTTTAC 632
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 TGGTGCACGTTAGTCTCCGTCCTTCTTCATCTTCCCATTACCGCTTTCTTCACGTTTTAC 600
Query 633 ATCTCTCTCGGAGTTC-CCGGAGTCGCCGTCTCTTCTTTTCTTACCAACTTCATCTCTTT 691
|||||||| ||||| | ||||||||||| |||| ||||||||||||||||| ||||| ||
Sbjct 601 ATCTCTCTTGGAGT-CGCCGGAGTCGCCATCTCCTCTTTTCTTACCAACTTTATCTCCTT 659
Query 692 GTCGCTTCTCCTTTGCTACATCTACTTGGAAAACAACAACAACGACAAAACCACTTCCAA 751
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 660 GTCGCTTCTCCTTTGCTACATCTACTTGGAAAACAACAACAACGACAAAACCAGTTCTAA 719
Query 752 GTCTCTTTGTCTTGATACGCCGTTGATGCTGTATGGTTCGAGAGACTCCGGTGAAAATGA 811
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||
Sbjct 720 GTCTCTTTGTCTTGATACGCCGTTGATGCTGTCTGGTTCCAGAGACTCCGGTGTAGATGA 779
Query 812 TGTGTGGTCAACGCTGGTTAAATTCGCTGTTCCGAGCTGTATAGCGGTTTGCTTGGAGTG 871
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 780 AGTGTGGTCAACGCTGGTTAAGTTCGCCGTCCCGAGCTGTATAGCGGTTTGCTTGGAGTG 839
Query 872 GTGGTGGTACGAGTTCATGACGGTCCTCGCTGGATATCTCCCCGAGCCGAAGGTGGCGCT 931
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 840 GTGGTGGTATGAGTTCATGACGGTCCTCGCCGGATATCTCCCGGAGCCGAAGGTGGCGCT 899
Query 932 AGCAGCAGCCGCCATCGTGATACAAACAACCTCATTGATGTATACAATCCCAACGGCCCT 991
|||||| |||||||||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct 900 AGCAGCGGCCGCCATCGTGATCCAAACGACGTCATTGATGTATACAATCCCAACCGCCCT 959
Query 992 CTCGGCCGCGGTATCCACGAGGGTAAGCAACGAGTTAGGAGCAGGACGGCCAGAGAAAGC 1051
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTCTGCCGCGGTTTCCACAAGGGTAAGCAACGAGTTAGGAGCAGGACGGCCAGAGAAAGC 1019
Query 1052 AAAAACAGCGGCGACTGTGGCTGTCGGAGCCGCCGTGGCAGTGTCAGTGTTTGGACTTGT 1111
| ||||||||| | || || |||||||||||| |||| ||||||||||||||||||||
Sbjct 1020 ACGTACAGCGGCGGCAGTAGCGGTCGGAGCCGCCATGGCCGTGTCAGTGTTTGGACTTGT 1079
Query 1112 GGGGACCACCGTGGGGAGAGAAGCTTGGGGAAAAGTTTTCACCGCCGACAAAGTTGTCCT 1171
|||||||||| |||| |||||||||||||||||||||||||| || ||| |||||||||
Sbjct 1080 GGGGACCACCCTGGGAAGAGAAGCTTGGGGAAAAGTTTTCACGGCGGACGGAGTTGTCCT 1139
Query 1172 CGAGCTGACGGCGGCGGTTATTCCGGTGATTGGAGCTTGTGAGCTTGCCAACTGTCCTCA 1231
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 CGAGCTGACGGCGGCCGTTCTTCCGGTGATAGGAGCTTGTGAGCTTGCCAACTGTCCTCA 1199
Query 1232 GACCATTAGCTGTGGAATCTTACGTGGCAGTGCGAGGCCAGGTATAGGGGCCAAGATTAA 1291
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GACCATTAGCTGTGGAATCCTACGTGGCAGTGCGAGGCCAGGTATAGGGGCCAAGATTAA 1259
Query 1292 TTTCTACGCCTTCTATGTAGTTGGAGCACCAGTGGCGGTTGTTTTAGCGTTTGTGTGGGG 1351
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 TTTCTACGCCTTCTATGTAGTTGGAGCACCAGTGGCTGTTGTTTTAGCGTTTGTGTGGGG 1319
Query 1352 TTTAGGCTTCATGGGCCTATGCTATGGCTTGCTTGGGGCACAGCTAGCTTGTGCAATCTC 1411
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1320 TTTAGGCTTCATGGGCCTATGCTATGGTTTGCTTGGGGCACAGCTAGCTTGTGCAATCTC 1379
Query 1412 CATTTTGACCGTTGTTTATAACACAGATTGGAACAAAGAGTCCTTGAAGGCTCATGACTT 1471
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CATTTTGATCGTTGTCTATAACACAGATTGGAACAAAGAGTCCTTGAAGGCTCATGACTT 1439
Query 1472 GGTGGGCAAGAACGTCATTTCACCTAATGTCGATCAAATTATTGTCAAATGCGAAGAAGG 1531
||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1440 GGTGGGCAAAAACGTCATTTCTC--A-TGTCGATCAAATTATTGTCAAATGCGAAGAAGG 1496
Query 1532 CCTACACTAA 1541
|||||||||
Sbjct 1497 TCTACACTAA 1506
> Ahg943270 jgi|Araly1|943270|scaffold_603814.1
Length=297
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1105 GACTTGTGGGGACCACCGTGGGGAGAGAAGCTT 1137
|||||||||||||||||||||||||||||||||
Sbjct 125 GACTTGTGGGGACCACCGTGGGGAGAGAAGCTT 157
> Ahg925173 jgi|Araly1|925173|scaffold_200734.1
Length=1639
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 858 GTTTGCTTGGAGTGGTGGTGGTACGAGTTCATGA 891
||||| ||||||||||||||||||||||||||||
Sbjct 900 GTTTGTTTGGAGTGGTGGTGGTACGAGTTCATGA 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57706721175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5