BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G49140.1

Length=2943
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907024 jgi|Araly1|907024|Al_scaffold_0002_105                    78.7    2e-13
  Ahg893756 jgi|Araly1|893756|Al_scaffold_0006_1752                   76.8    8e-13


> Ahg907024 jgi|Araly1|907024|Al_scaffold_0002_105
Length=3279

 Score = 78.7 bits (42),  Expect = 2e-13
 Identities = 391/554 (71%), Gaps = 46/554 (8%)
 Strand=Plus/Plus

Query  217  GTGATAT-TCTCAAAGAACTATGCTTCTTCAAGCTGGTGTTTGGATGAGTTGGTTGAAAT  275
            ||||| | |||| ||||| ||||||||||||||||||||||||||||| ||||| || ||
Sbjct  223  GTGAT-TCTCTCTAAGAAATATGCTTCTTCAAGCTGGTGTTTGGATGAATTGGTGGAGAT  281

Query  276  TTTAAAGTGCAAGGAGGAGAGGAGG-CTAATACCGAT-----T-TTCTACAAAGTGAATC  328
             ||  |||||||  | |  | | || | ||||  |||     | ||||||  || | |||
Sbjct  282  ATTGGAGTGCAAAAAAGTTATG-GGACAAATAGTGATGACCATCTTCTACGGAGCGGATC  340

Query  329  CATCCGATGTAAG-AAATCAGACCGG-GAAATTTGGGAGAGGCTTCCGA-GAAACCTGTG  385
            | || |||||  | ||| |||| ||| ||| || ||||  | ||| ||| ||||| ||||
Sbjct  341  CTTCTGATGTGCGGAAA-CAGATCGGAGAA-TTCGGGATCG-CTTTCGATGAAACTTGTG  397

Query  386  AAGGGAAGAATGATGAG-ACACAAAATAAATGGAAG-GCAGCCTTGACCGAAGCGG-CAA  442
             | | ||||  || ||| | |  ||| ||||||| | | ||| ||||  |||| || |||
Sbjct  398  CACGTAAGACGGACGAGGAAAGGAAA-AAATGGA-GTGAAGCTTTGAATGAAGTGGGCAA  455

Query  443  ATATAGCGGGAGAGGA-TTCACAAAGCTGGAAAAATGAGGCAGATTTTCTCACAAAA-AT  500
             ||| || ||||| || |||| |  | ||| | ||||| ||| || |  ||| | || ||
Sbjct  456  -TATTGCTGGAGAAGACTTCA-ACCGATGGGACAATGAAGCAAATATGATCA-AGAAGAT  512

Query  501  CGC-GAAAGATATATTG-GCCAAACTCAATGGTACACCGTCAAATGATTTTGAAAACATA  558
             || ||| ||| | ||  |  ||||| |||| |||||||||||  | ||||||    || 
Sbjct  513  TGCCGAA-GATGT-TTCAGATAAACTGAATGCTACACCGTCAAGGGTTTTTGATGGTATG  570

Query  559  ATTGGAATTGAATCC-CATATGGAG-AAAATGGT-TCAATTATTATG-TTTAAACGATGA  614
             | ||| || |   | ||| || || |||||||  ||  ||  || | |||| |  ||||
Sbjct  571  GTGGGACTT-ACGGCTCATTTG-AGGAAAATGGAGTCT-TTGCTA-GATTTAGATAATGA  626

Query  615  TGACGTTAGGATGGTTGGGATTTGGGGTCCCGCTGGTATTGGTAAGACCACCATCGCAAG  674
            ||| |||| ||||||||  ||    ||||| || || ||||||||||| || || || ||
Sbjct  627  TGAAGTTAAGATGGTTGCAATCACTGGTCCTGCAGGGATTGGTAAGACTACAATTGCGAG  686

Query  675  GGTTTTACACAGC-CG-CTTTTCTGGTGACTTCC-GCTTTACT-GTTTTCATGGAGAACG  730
             | |||||| | | |  || | ||  | | || | |||| ||| |||||  |||| ||| 
Sbjct  687  AGCTTTACAAA-CTCTACTCT-CTAATAAGTTTCAGCTT-ACTTGTTTTG-TGGACAACC  742

Query  731  TTAGGGGAAACTAT  744
            ||||||||| ||||
Sbjct  743  TTAGGGGAAGCTAT  756


> Ahg893756 jgi|Araly1|893756|Al_scaffold_0006_1752
Length=1044

 Score = 76.8 bits (41),  Expect = 8e-13
 Identities = 53/59 (90%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  232  AACTATGCTTCTTCAAGCTGGTGTTTGGATGAGTTGGTTGAAATTTTAAAGTGCAAGGA  290
            ||||| ||||||||||||||||||||||||||||| || |||||  | |||||||||||
Sbjct  193  AACTACGCTTCTTCAAGCTGGTGTTTGGATGAGTTAGTGGAAATCATGAAGTGCAAGGA  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 111109244665


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5