BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49170.1
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494978 jgi|Araly1|494978|fgenesh2_kg.8__794__AT5G49170.1 1040 0.0
> Ahg494978 jgi|Araly1|494978|fgenesh2_kg.8__794__AT5G49170.1
Length=725
Score = 1040 bits (563), Expect = 0.0
Identities = 680/735 (93%), Gaps = 13/735 (2%)
Strand=Plus/Plus
Query 1 AAGAGAGTGAAGAAGCATTGAATCAACCAAAACACTAACACTAGAACACCTTTTCTCTTG 60
||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1 AAGAGGGTGAAGAAGCATTGAATCAACC-AAACACTAACACTAAAACACCTTTTCTCTTG 59
Query 61 AAACACT-AAAAACTAAAGTCACTTCACCAATGTCTAA-CAAGAGCATATCTCCAATTTT 118
|||||| ||| |||||| ||| ||||||||||||||| ||| | || |||||| |||||
Sbjct 60 GAACACTCAAATACTAAACTCATTTCACCAATGTCTAACCAA-AACAAATCTCCTATTTT 118
Query 119 CCCAATGCTCCAATCTCAACATTTTAGCGATTATGGCTTCGATCCCCAGATCCATTACTT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 CCCAATGCTCCAATCTCAACATTTTAGCGATTATGGCTTCGATCCCCAGATCCACTACTT 178
Query 179 TCAGGTTTTGGAAGAAGCAAAGAAACACAAGTCTTCCTCCATTGACACATTTCAGTTCAA 238
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 179 TCAGGTTTTGGAAGAAGCAAAGAAGCACAAGTCTTCTTCCATTGACACATTACAGTTCAA 238
Query 239 ACTTCAAAAACCTATCTCGAAAGACGATTTGATCCGAACCACTCTCCACAACAAGAACAA 298
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 239 GCTTCAAAAACCTATCTCGAAAGATGATTTGATCCGAACCACTCTCCACAAGAAGAACAA 298
Query 299 GAACAAGAAGCGTTGGTTATGGTGCAAGAACGCTTTGTTCTTCTTTAAGTGGCGGAAATG 358
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 299 GAACAAGAAGCGTTGGTTATGGTGCAAGAACGCTTTGTTCTTCTTGAAGTGGAGGAATTG 358
Query 359 GCCAATCTCCTCTGCCGTCGTTGGAAGATGCTCCGGCGAAAACGACGGAGACAATGAGTT 418
|||| ||| || |||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 359 GCCAGTCT--TC-GCCGTCGTTGGACGATGCTCTGGCGAAAATGACGGAGACAATGAGTT 415
Query 419 CGACGATCGTAGCGATGTTCATTTTGCTAGAGCTAGAAATTTTCGAGCTGGTTCGATATC 478
||||||| |||| ||||||||| ||||||||||||| |||||||| || |||||||||||
Sbjct 416 CGACGATAGTAGTGATGTTCATATTGCTAGAGCTAGGAATTTTCGTGCCGGTTCGATATC 475
Query 479 AGGTCCGGTTTACGTGACAGAGAGTTGGAGCGGTTCGAGTACACCATACCGGCCGATGAC 538
||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 476 GGGTCCGGTTTACGTGACGGAGAGCTGGAGCGGTTCGACTACACCGTACCGGCCGATGAC 535
Query 539 TACGACG-TCGGCAGTTCAGTATTTGAGTCTACGGGAGCTTAATATGGAGCGACAGCAGA 597
|||| | ||||| |||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 536 GACGA-GATCGGCGGTTCAGTATTTGAGTCTACGGGAGCTTACTATGGAGCGACAACAGA 594
Query 598 GGATCACTACCTCTTCTTCTATGTCCGGTCCAATTTACTTGGTCACGTGAATAAAAACAT 657
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 595 GGATCACTACCACTTCTTCTATGTCCGGTCCTATTTACTTGGTCACGTGAATAAAAACAT 654
Query 658 CAATTTGCAGAATTATCCTTTTATAGGATCaaaaaaggaaaaagaaaTTAATAAGATTTG 717
||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||
Sbjct 655 CAATTTGCAGAATTATCCTTTTATAGGATCATAAAAGGAAAA-GATATTAA---GATTTG 710
Query 718 TTTTGGGAGGTGTGG 732
|||||||||||||||
Sbjct 711 TTTTGGGAGGTGTGG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5