BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49180.1
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494979 jgi|Araly1|494979|fgenesh2_kg.8__795__AT5G49180.1 2615 0.0
> Ahg494979 jgi|Araly1|494979|fgenesh2_kg.8__795__AT5G49180.1
Length=1905
Score = 2615 bits (1416), Expect = 0.0
Identities = 1757/1919 (92%), Gaps = 34/1919 (2%)
Strand=Plus/Plus
Query 12 TTAAGTCCACTCTTCTCTCTC-AT--AT-CTTCTAACCAAAACAGAGTCACAAGGGGCTC 67
|||| |||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 1 TTAACTCCACTCTTCTCTCTCTTTCCTTCCTTCTAACCAAAACAGAGTCACAAGGGGCTC 60
Query 68 TTAAGCCCTTCCAACTAAATTCTTTTCTTTTGTTCTCTTGAAACTGAATCCACCAGACaa 127
|||||| ||||||||||||| ||| || || ||| ||||||||||| ||||
Sbjct 61 -GAAGCCCCTCCAACTAAATTC--TTC--TT-TTAAATTG----TGAATCCACCAAACAA 110
Query 128 aaaaaTGGGGGTTGATGGTGAACTGAAAAAGAAGAAATGCATCATTGCTGGGGTTATCAC 187
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 111 AAAAATGGGGGTTGATAGTGAATTGAAAAAGAAGAAATGCATCATTGCTGGGGTTATCAC 170
Query 188 AGCCTTGCTCGTTCTCATGGTTGTCGCTGTTGGCATCACAACATCAAGAAACACCAGTC- 246
|||||||||||| |||||||||||||||| | ||||| ||||||||||||||| ||||
Sbjct 171 GGCCTTGCTCGTTATCATGGTTGTCGCTGTCGCCATCATAACATCAAGAAACACAAGTCA 230
Query 247 --ATTCAGAAAAAATCGTCCCTGTGCAGATTAAAACAGCCACCACGGCAGTTGAAGCAGT 304
||||||| ||||||| ||| ||||||||||||||| |||| | ||||| ||||||||
Sbjct 231 TAATTCAGACAAAATCGCCCCAGTGCAGATTAAAACAACCACAAATGCAGTCGAAGCAGT 290
Query 305 TTGTGCACCTACTGATTACAAAGAGACTTGTGTCAATAGTCTCATGAAAGCTTCTCCTGA 364
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 291 TTGTGCACCTACTGATTACAAAGAGACTTGTGTCAACAGTCTAATGAAAGCTTCTCCTGA 350
Query 365 CTCTACTCAGCCTCTTGATCTCATTAAGCTTGGCTTCAACGTCACCATTCGATCCA-TAG 423
||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||| ||
Sbjct 351 CTCCACTCAGCCTCTTGACCTCATAAAGCTTGGCTTCAACGTCACTATTCGCTCCATTA- 409
Query 424 AAGATAGCATCAAGAAAGCTTCCG-TGGAGCTGACAGCCAAGGCAGCTAATGACAAGGAT 482
||||| |||||||||||||||||| | ||||| | |||||||||||| || || || ||
Sbjct 410 AAGATGGCATCAAGAAAGCTTCCGCT-GAGCTAAAAGCCAAGGCAGCCAACGATAACGAG 468
Query 483 ACCAAAGGGGCTTTGGAGTTGTGTGAGAAGCTTATGAATGATGCTACAGATGATCTGAAG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ACCAAAGGGGCTTTGGAGTTGTGTGAGAAGCTTATGAATGATGCTACAGATGATCTGAAG 528
Query 543 AAGTGTCTTGATAACTTTGATGGGTTCTCAATTCCTCAGATTGAGGACTTTGTCGAAGAT 602
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 529 AAATGTCTTGATAACTTTGATGGGTTCTCAATTACTCAGATTGAGGACTTTGTCGAAGAT 588
Query 603 CTTCGTGTTTGGCTTAGTGGCTCCATTGCTTATCAACAAACATGTATGGATACGTTTGAA 662
|||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 589 CTTCGTGTATGGCTTAGTGGCTCCATTGCGTATCAACAAACATGCATGGATACTTTTGAG 648
Query 663 GAAACTAACTCGAAACTTTCACAAGACATGCAGAAAATCTTTAAAACATCTAGAGAACTC 722
|||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 649 GAAATTAAGTCGAACCTTTCACAAGACATGCATAAAATCTTTAAAACATCTAGAGAACTC 708
Query 723 ACTAGTAATGGCCTTGCCATGATTACTAACATCTCTAACCTTCTCGGAGAGTTCAACGTC 782
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 709 ACAAGTAATGGCCTTGCCATGATTACTAACATCTCTAACCTTCTCGGAGAGTTCAACATC 768
Query 783 ACAGGAGTAACCGGGGATCTCGGTAAA-TACGCAAGAAAACTTTTGTCGGCGGAAGACGG 841
|| ||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||
Sbjct 769 ACCGGATTAACCGGGGATCTCGG-AAACTACGCAAGAAAACTTTTATCAACGGAAGACGG 827
Query 842 TATACCAAGTTGGGTTGGACCAAACACTAGACGGCTCATGGCAACGAAAGGAGGTGTGAA 901
||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 828 TATCCCAAGTTGGGTAGGACCAAACACTCGACAGCTCATGGCAACGAAAGGAGGTGTGAA 887
Query 902 AGCTAACGTGGTGGTTGCACACGACGGAAGTGGTCAGTACAAGACTATCAATGAAGCCTT 961
|||||| ||||| || || || |||||||| ||||||||||||||||||||||| |||||
Sbjct 888 AGCTAATGTGGTAGTGGCGCAAGACGGAAGCGGTCAGTACAAGACTATCAATGAGGCCTT 947
Query 962 GAATGCAGTGCCTAAAGCCAACCAAAAGCCATTTGTTATCTACATTAAGCAAGGTGTCTA 1021
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 948 GAATATTGTTCCTAAAGCCAACCAAAAGCCATTTGTTATCTATATTAAGCAAGGTGTCTA 1007
Query 1022 TAACGAGAAAGTTGACGTCACCAAGAAAATGACTCATGTCACTTTCATCGGTGATGGACC 1081
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1008 TAACGAGAAAGTTGACGTCACCAAGAAAATGACTCACGTCACTTTTATTGGTGATGGACC 1067
Query 1082 AACCAAAACTAAGATCACTGGTAGTCTCAACTATTACATTGGCAAGGTCAAGACATACCT 1141
||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1068 AACCAAAACGAAGATCACTGGTAGTCTCAACTTTTACATCGGCAAGGTCAAGACATACCA 1127
Query 1142 TACTGCCACTGTTGCGATCAATGGTGATAACTTCACGGCGAAGAACATCGGGTTTGAAAA 1201
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1128 TACTGCCACTGTTGCGATCAATGGTGATCACTTCACGGCGAAGAACATCGGGTTTGAAAA 1187
Query 1202 CACTGCAGGTCCCGAAGGACATCAAGCTGTGGCCCTAAGAGTCTCGGCGGATTTGGCCGT 1261
|||||| ||||||||||||||||||||||||||||||||||| |||| ||| | |||||
Sbjct 1188 CACTGCCGGTCCCGAAGGACATCAAGCTGTGGCCCTAAGAGTATCGGGGGACTACGCCGT 1247
Query 1262 CTTCTACAACTGCCAAATCGATGGTTACCAAGACACACTCTACGTCCATTCTCATCGTCA 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TTTCTACAACTGCCAAATCGATGGTTACCAAGACACACTCTACGTCCATTCTCATCGTCA 1307
Query 1322 ATTCTTCCGTGACTGCACAGTCTCGGGCACCGTTGACTTCATTTTCGGCGATGGTATAGT 1381
||||||||||| |||||| |||||||||||||||||||||| |||||||||| | |||
Sbjct 1308 GTTCTTCCGTGATTGCACAATCTCGGGCACCGTTGACTTCATCTTCGGCGATGCAAAAGT 1367
Query 1382 AGTCTTACAAAACTGTAACATTGTTGTGAGAAAACCCATGAAAAGTCAGTCTTGCATGAT 1441
|||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1368 TGTCTTACAAAACTGCAACATTGTAGTGAGAAAACCCATGAAAGGTCAGTCTTGCATGAT 1427
Query 1442 CACAGCCCAAGGCCGCTCCGATAAACGTGAATCCACCGGACTCGTGCTACAAAACTGCCA 1501
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1428 CACAGCCCAAGGCCGGACCGATGTACGTGAATCCAGCGGACTCGTGCTACAAAACTGCCA 1487
Query 1502 TATTACCGGAGAACCAGCGTATATTCCCGTAAAATCTATAAACAAAGCATATCTTGGAAG 1561
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1488 CATTACCGGAGAACCGGCGTACCTTCCCGTAAAATCTATAAACAAAGCATATCTTGGAAG 1547
Query 1562 GCCATGGAAAGAGTTTTCAAGAACCATTATAATGGGAACAACCATAGACGACGTTATTGA 1621
||||||||||||||| ||||||||||| ||||||||||| ||||||||| || |||||||
Sbjct 1548 GCCATGGAAAGAGTTCTCAAGAACCATAATAATGGGAACGACCATAGACAACATTATTGA 1607
Query 1622 TCCAGCGGGATGGCTTCCTTGGAATGGTGATTTTGCACTTAATACGCTTTACTATGCTGA 1681
||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct 1608 TCCAGCGGGATGGCTTCCTTGGAATGGTGATTTTGCACTCAACACACTTTATTATGCTGA 1667
Query 1682 GTATGAGAATAATGGGCCTGGGTCAAACCAAGCCCAACGTGTTAAGTGGCCTGGAATTAA 1741
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1668 GTATGAGAATAATGGGCCTGGGTCAGACCAAGCCCAACGTGTTAAGTGGCCTGGAATTAA 1727
Query 1742 GAA-ACTATCGCCCAAGCAAGCTCTTCGATTTACTCCTGCTAGGTTTTTACGTGGTAACT 1800
||| | | || || |||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1728 GAAGATT-TCACCTAAGCAAGCTCGTCGATTTACTCCAGCTAGGTTTTTACGTGGTAACT 1786
Query 1801 TGTGGATTCCACCAAATCGTGTGCCTTACATGGGGAATTTTCAGTAGATTCCAATTGGTG 1860
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1787 TGTGGATTCCACCAAATCGTGTGCCTTACATGGGGAATTTGCAGTAGATTCCAATTGGTG 1846
Query 1861 AATTTTC-----C-ACTTTCTGTGTGCTCTTTaaaaaaaaaaa--T-GAAGGTGAATAA 1910
||||||| | ||||||| ||| |||| |||||||||||| | ||||||||||||
Sbjct 1847 AATTTTCTTTTTCCACTTTCTATGTTCTCTCTAAAAAAAAAAAAATTGAAGGTGAATAA 1905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73361811870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5