BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49210.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949410 jgi|Araly1|949410|scaffold_801297.1 939 0.0
> Ahg949410 jgi|Araly1|949410|scaffold_801297.1
Length=625
Score = 939 bits (508), Expect = 0.0
Identities = 586/623 (94%), Gaps = 7/623 (1%)
Strand=Plus/Plus
Query 204 AGATTTAGTG-AAATGGCTTTTTGCAATAAGCTAAGCCGTTTCGTGAGGAGGCAGAGTGA 262
||||| |||| ||||||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct 8 AGATTCAGTGAAAATGGCGTTTTGCAATAAGCTAAGCCGTCTCGT---GAGGCAGAGTGA 64
Query 263 GAATGCTTCCATGATTGGCTCTCTCAGGTCTTTCTCTGCTGATGCCACTCACCATAGATT 322
||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 65 GAACGCTTCCATGATTAGCTCTCTCAGGTCTTTCTCTGCTGAAGCCACTCACCATAGATT 124
Query 323 CCACCAGGAGACTCACAATTTTCTTGAGCCAGAATACTATATTGGTAGCTGGGAAGCTCC 382
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 125 CCACCAAGAGACACACAATTTTCTTGAGCCAGAAAACTATATTGGTAGCTGGGAAGCTCC 184
Query 383 GAGTGATCCGAAAGATGCAGAGAGAAAGCTTGCTCAGCTTAGGAGAGATTATGCTAAGAA 442
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 185 GAGTGATCCGAAAGATGCAGAGAGAAAGCTTGCGCAGCTTAGGAGAGATTATGCAAAGAA 244
Query 443 AGTTCGAGTGTATCGTAAAGAGTACATTCATGAGATTGAGATGCTTCGTGTTGAGAAACA 502
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 245 AGTTAAAGTGTATCGTAAAGAGTATATTCATGAGATTGAGATGCTTCGTGTTGAGAAACA 304
Query 503 GCGTAAGGATGAGGCTAGATTGTTGGCTGAACGAGCTGCTAATGAAGAGAGGCGACTCTT 562
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 305 GCGTAAGGATGAGGCTAGATTGTTGGCTGAACGAGCTGCTAATGAGGAGAGGCGACGGTT 364
Query 563 GAAGGCTGAGGCTGCTAAGGTTAGAGCTGAGGAACGTAAGATTGCTGACGAAGAGTTCAG 622
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 365 GAAGGCTGAGGCTGCTAAGGTTAGGGCTGAGGAACGTAAGATTGCTGATGAAGAGTTCAG 424
Query 623 GCAAACTCTGATAAAAGAAAGAGCagaaaagctagagatgtggaagatgatgggccaaaa 682
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 425 GCAAACTCTGATTAAAGAAAGAGCAGAAAAGCTGGAGATCTGGAAGATGATGGGCCAAAA 484
Query 683 gagggaagagaagatcaaagagagagagaagCTACTGCGTGAACAGAGTTCACTATGGAT 742
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 485 AAGGGAAGAGAAGATCAAAGAGAGAGAGAAGCTACTACGTGAGCAGAGTTCACTATGGAT 544
Query 743 CGAGCAAAAAGAACTGGAGAGGAAGATTACAGAAGCCTTGGTTGACAAC-GTTGTTCTCT 801
|||| ||| ||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 545 TGAGCCAAAGGAACTGGAGAGGAAGATTACAGAAGCCTTGGTTGACA-CTGCTGTTCTCT 603
Query 802 AAACCAAAGCTTCTCCTCTGAAT 824
||||||| |||||||| ||||||
Sbjct 604 AAACCAA-GCTTCTCCCCTGAAT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5