BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49215.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494984 jgi|Araly1|494984|fgenesh2_kg.8__800__AT5G49215.2 2313 0.0
Ahg477994 jgi|Araly1|477994|fgenesh2_kg.3__695__AT3G06770.2 95.3 1e-18
> Ahg494984 jgi|Araly1|494984|fgenesh2_kg.8__800__AT5G49215.2
Length=1675
Score = 2313 bits (1252), Expect = 0.0
Identities = 1463/1562 (94%), Gaps = 26/1562 (2%)
Strand=Plus/Plus
Query 19 cttctctgtgttgttctctgtggtcattcttctttcttttcacttcttcttctt--ct-t 75
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1 CTTGTCTGTGTTGTTCTCTGTGGTCATTCTTCTTTC-TTTCACTTCTTCTTCTTCGCTCT 59
Query 76 cgc-tcttc-ttctCACTGTCGGGTTCCATTTGGCGCGAAAAGTTCTTCACtttttccag 133
| | ||| | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 C-CTTCTCCTTTCTCAGTGTCGGGTTCCATTTGGCGCGAAAAGTTCTTCACTTTTTCCAG 118
Query 134 cttttttttgttctctgacagt-ttttttttttGTTTGGTTACAAATAAAGATGCCAGTA 192
|||||||||||||||||||| | |||||||||| ||| |||||||||||||||||
Sbjct 119 CTTTTTTTTGTTCTCTGACA-TCTTTTTTTTTT-TTT--TTACAAATAAAGATGCC---- 170
Query 193 AGTGTGGCACTAGTTTTGCTGTTGACATTGAGCAGTGTGATTCTGATTAATGGGAGAAGT 252
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 A--GTGGCACTAGTTTTGCTGTTGACATTGAGCAGTGTGATTCTGATTAATGGGAGAAGT 228
Query 253 TACGGCGTCGGAAACATATGCGATCGTGGTCGGAGACCGAGCGAGAGACCACACAGTGTC 312
||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 229 TACGGCGTCGGAAACGTATGCGATCTTGGTCGGAGACCGAACGAGAGACCACACAGTGTC 288
Query 313 AAAATCACTGATTTTGGTGCTGTGGGAGATGG-GAAAACGTTGAACACACTTGCGTTTCA 371
||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct 289 AAAATCACTGATTTTGGAGCTGTGGGAGATGGTGAAA-CGTTGAACACACTTGCGTTTCA 347
Query 372 AAATGCTGTCTTTTATCTAAAGTCTTTCGCTGATAAAGGTGGTGCTCAGCTTTATGTTCC 431
||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 348 GAATGCTGTCTTCTATCTTAACTCTTTTGCTGATAAAGGTGGTGCTCAGCTTTATGTCCC 407
Query 432 TCCGGGACGGTGGCTCACCGGAAGTTTCAACCTCACCAGTCATCTCACTCTCTTTCTCGA 491
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 408 TCCGGGACGGTGGCTCACCGGAAGTTTCAATCTCACCAGTCATCTCACTCTCTTTCTCGA 467
Query 492 GAAAGACGCCGTCATACTTGCCTCACAGGATCCATCGCATTGGCAAGTCA-CGGATGCCT 550
|||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |
Sbjct 468 GAAAGACGCCGTCATACTTGCCTCACAGGATCCATCACATTGGCAAGT-AGCGGATGCTT 526
Query 551 TACCGTCATATGGGCGGGGTATTGATCTACCAGGGAAGAGATACATGAGTTTGATAAACG 610
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TACCATCATATGGGCGGGGTATTGATCTACCAGGGAAGAGATACATGAGTTTGATAAACG 586
Query 611 GTGACATGCTACATGATGTAGTAGTAACAGGTGATAACGGTACCATAGATGGGCAAGGCC 670
|||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 587 GTGACACGCTACATGATGTAGTAGTAACAGGGGATAACGGTACTATAGATGGGCAAGGCC 646
Query 671 TTGTTTGGTGGGATCGGTTTAATTCTCATTCTTTAGAGTACAGTCGCCCTCACCTTGTCG 730
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 647 TTGTTTGGTGGGATCGTTTTAATTCTCATTCTTTAGAGTACAGTCGCCCTCACCTTGTTG 706
Query 731 AGTTTGTCTCTGCCGAAAATGTCATTGTATCAAATCTTACATTCTTGAACGCTCCGGCTT 790
||||||||||| ||| |||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 707 AGTTTGTCTCTTCCGGAAATGTCATTGTCTCAAATCTTACGTTCTTGAATGCTCCGGCTT 766
Query 791 ATACTATCCATTCAGTTTATTGTCGCAATTTATACATTCATAGAGTAACGGCTAATACTT 850
||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 767 ATACTATCCATTCGGTTTATTGTAGCAATTTATACATTCATAGAGTAACAGCTAATACTT 826
Query 851 GTCCAGAATCTCCTTATACCATCGGTATTGTCCCAGATTCTTCTGAAAATGTGTGTATCC 910
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 827 CTCCAGAATCTCCTTATACCATCGGCATTGTCCCGGATTCTTCTGAAAATGTGTGTATCC 886
Query 911 AAGAATCTAGTATCAACATGGGGTATGATGCCATTTCTCTTAAAAGTGGTTGTGATGAAT 970
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 887 AAGATTCTAGTATCAACATGGGGTATGATGCCATTTCTCTTAAAAGTGGTTGGGACGAAT 946
Query 971 ACGGT-TTATCGTATGCAAGACCTACTGCTAATGTCCAGATAAGAAATGTTTACCTTAGA 1029
||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 947 ACGGTATT-TCGTATGCAAGACCTACTGCAAATGTCCAGATAAGAAATGTTTACCTCGGA 1005
Query 1030 GCAGCTTCTGGTTCCTCCATTTCCTTTGGTAGTGAAATGTCTGGTGGTATATCTGATGTT 1089
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1006 GCAGCTTCTGGTTCATCCATTTCCTTCGGTAGTGAAATGTCTGGTGGCATATCTGATGTC 1065
Query 1090 GAGGTCAGTGATGCTCACATACACAACTCGTTATCCGGGATTGCCTTTAGAACAACAAAT 1149
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1066 AAGGTTAGTGATGCTCACATACACAACTCGTTATCCGGGATTTCCTTTAGAACAACAAAC 1125
Query 1150 GGAAGAGGTGGTTATATTAAGGAGATTGATATTTCCAACATCCATATGGTTAATGTTGGT 1209
|||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 1126 GGAAGAGGCGGTTACATTAAAGAGATCGATATTTCCAACATCCATATGGTTAATGTTCGT 1185
Query 1210 ACTGCATTTCTAGCCAACGGTAGCTTCGGTACTCATCCGGATTCTGGTTTCGATGAAAAT 1269
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 1186 ACTGCGTTTCTAGCCAATGGTAGCTTCGGTACTCATCCGGATTCTGGTTTCGACGCTAAT 1245
Query 1270 GCTTACCCGCTTGTGAGTCACATCAGGTTACATGACATTGTTGGAGAAAACATAAGCACT 1329
|||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1246 GCTTTCCCGCTTGTGAGTCACATCAGATTACATGACATTGCTGGAGAAAACATAAGCACC 1305
Query 1330 GCTGGATATTTCTTTGGAAC-GAAAGAGTCTCCTTTCACTTCGATTTTGTTATCGAATAT 1388
|| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct 1306 GCCGGATATTTCTTTGGAACCGAA-GAGTCTCCTTTCACTTCGATTTTCTTATCGAATAT 1364
Query 1389 CTCTCTGTCGATTAAAAACTCGGCTTCCCCTGCTGATTCTTGGCAATGCTCATATGTTGA 1448
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 1365 CTCTCTGTCGATTAAAAACTCCGATTCTCCTGCTGATTCTTGGCAATGCTCATATGTTGA 1424
Query 1449 CGGGTCTTCGGAATTCGTAGTCCCTGAACCGTGCCTTGAGCTGAAGAGTTTTGATAGTTA 1508
||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1425 CGGTTCTTCAGAATCCGTAGTCCCTGAACCGTGCCCCGAGCTGAAGAGTTTTGATAGTTC 1484
Query 1509 CTATGGTAGAGCTGAGGCCTTATGAAACCAAACTTCATTAGGAATGATGATTCATATTTG 1568
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1485 CTATGGTAGAGCTGAGGCCTTATGAAACCAAACTTCATTAGAAATGATGATTCATATTTG 1544
Query 1569 TT 1570
||
Sbjct 1545 TT 1546
Score = 161 bits (87), Expect = 1e-38
Identities = 87/87 (100%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1657 TTGTTGTCCCTGTTATTTGCAGCTTGTGAGATTAATATATCTTGTACAGGTTCATTTCTT 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 TTGTTGTCCCTGTTATTTGCAGCTTGTGAGATTAATATATCTTGTACAGGTTCATTTCTT 1648
Query 1717 CATTCATGTGTAACCAAAGAAATTTTG 1743
|||||||||||||||||||||||||||
Sbjct 1649 CATTCATGTGTAACCAAAGAAATTTTG 1675
> Ahg477994 jgi|Araly1|477994|fgenesh2_kg.3__695__AT3G06770.2
Length=1694
Score = 95.3 bits (51), Expect = 1e-18
Identities = 66/73 (90%), Gaps = 2/73 (3%)
Strand=Plus/Plus
Query 1672 TTTGCAGCTTGTGAGATTAATATATCTTGTACAGGTTCATTTCTTCATTCATGTGTAACC 1731
|||||| |||||||| ||| | ||| ||||||||||||||||||||||||||||||| |
Sbjct 1563 TTTGCATATTGTGAGA-TAAGAAATC-TGTACAGGTTCATTTCTTCATTCATGTGTAAAC 1620
Query 1732 AAAGAAATTTTGT 1744
|||||||||||||
Sbjct 1621 AAAGAAATTTTGT 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5