BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49220.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494985 jgi|Araly1|494985|fgenesh2_kg.8__801__AT5G49220.1 2420 0.0
> Ahg494985 jgi|Araly1|494985|fgenesh2_kg.8__801__AT5G49220.1
Length=1732
Score = 2420 bits (1310), Expect = 0.0
Identities = 1615/1752 (92%), Gaps = 62/1752 (4%)
Strand=Plus/Plus
Query 72 TTTAGTCTCTTCTCTTCTTTATTTTTTCTGGGGAGAAAGAAATTTCACttttttttATCC 131
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TTTACTCTCTTCTCTTCTTTATTTTTTCTGGGGAGAAAGAAATTTCACTTTTTTTT-TCC 59
Query 132 GATTTCTGCTTCATCTGGGTTTTGGATTTTTGCGATCGATTTTGAGAAATTAGCAAACAA 191
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 GATTT-TGCTTCATCTGGGTTTTGGATTTTTGCGATCGATTTTGA-AAATTAGCAAACAA 117
Query 192 TGTCGGGTTCTGGAGGAGTTTCAATCGCACGTACAGCGATCCGTGGTGAGAATCGGTTTT 251
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 118 TGTCGGGTTCTGGAGGAGTTTCCATCGCACGAACAGCGATCCGTGGTGAGAATCGGTTTT 177
Query 252 ATAATCCACCTCCGATGCGTAGGATGCAGCAAGAGGCCCAATTGCAGCAACAGATTAGGG 311
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 ATAATCCACCTCCGATGCGAAGGATGCAGCAAGAGGCGCAATTGCAGCAACAGATTAGGG 237
Query 312 AGAAGCAACGTCGTGATGATGAAGATGAGGTTTTGATGGATAAGGAAAGGAGAAAG--GC 369
||||||||||||||||||||||||| || | || || |||| |||| | |
Sbjct 238 AGAAGCAACGTCGTGATGATGAAGAAGAAG-AGCGA-AGA-AAGG--CTGAGACTGTTG- 291
Query 370 T-GCTACTG-TTGCTCCGAGGACTACTAGGAAAGGTCTTGGTGTGTCGGAGAGTAAGAGT 427
| |||| || | |||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 292 TGGCTA-TGCCTCCTCCGAGG---ACTAGGAAAGGTCTTGGTGTGTCGGAGAGTAAGAAT 347
Query 428 CGGGTTGTT-GTTTCGGGTTCGGAAGTATGTGCCGGTTCTTCTGATTCTTCTTCCGGGTC 486
|||||| || ||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 348 CGGGTT-TTGGTTTCTGGTTCGGAAGTTTATGCCGGTTCTTCTGATTCTTCTTCCGGGTC 406
Query 487 GGGTCGGGTTCTTAGTGATGGGTCTAACTTGGATCGGTTCTTGGAGCATACTACTCCTGT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GGGTCGGGTTCTTAGTGATGGGTCTAACTTGGATCGGTTCTTGGAGCATACTACTCCTGT 466
Query 547 TGTTCCTGCTCGTTTATTTCCCATGAGGAGCAGGTGGGAACTTAAAACCCGTGAATCGGA 606
||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 467 TGTTCCTGCCCGTTTATTTCCCATGAGGAGCAGGTGGGAACTTAAAAACCGCGAATCGGA 526
Query 607 TTGCCATACGTATTTTGTTTTGGAGGATCTTTGGGAGTCATTTGCTGAATGGAGTGCATA 666
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 527 TTGCCATACGTATTTTGTTTTGGAGGATCTTTGGGAGTCGTTTGCAGAATGGAGTGCATA 586
Query 667 CGGTGCTGGTGTTCCTTTAGAGATGCATCCTCTAGAAATGCATGGGAATGACTCCACTGT 726
|||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||| ||
Sbjct 587 CGGTGCTGGTGTTCCTCTAGAAATGCATCCTCTAGAAATGTATGGGAGTGACTCCACCGT 646
Query 727 GCAGTATTATGTGCCTTACTTATCCGGTATTCAGTTGTATGTTGATCCGTTGAAGAAGCC 786
||||||||||||||| |||||||| ||||||||||||||||| ||||| | |||||||||
Sbjct 647 GCAGTATTATGTGCCGTACTTATCTGGTATTCAGTTGTATGTGGATCCATCGAAGAAGCC 706
Query 787 TA-GAA---A--TCCAG-T--TGGA-G-A-TAATGAAGGAAGTAG----TG-AA----G- 824
|| ||| | | || | || | | | || ||||||||| || | || |
Sbjct 707 TAGGAACCCAGTTGAAGATAATGAAGGAAGTAGTGAAGGAAGCAGCAACAGTAAGGTCGA 766
Query 825 GAAG-CAGC-AA-CA-G-TAGGACTTTG-C-----CGGTGGACTTGAGTGTCGGTGAACT 873
|||| | | || || | || || |||| | ||||||||||||||||| |||||||
Sbjct 767 GAAGTTACCTAATCATGCTAAGAATTTGCCGAATGCGGTGGACTTGAGTGTCAGTGAACT 826
Query 874 GAATAGAATTAGTCTGAAAGATCAATCTATTACTGGCTCGTTGTCTAGTGGAGAAGCTGA 933
||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 827 GAATAGAATTAGTCTGAGAGATCAATCTATTGCTGGCTCATTGTCTAGTGGAGAAACTGA 886
Query 934 GATCAGCAATCCGCAGGGACGATTACTATTCGAGTACTTGGAGTATGAACCTCCATTTGG 993
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 887 GATCAGCGATCCGCAGGGACGATTACTATTCGAGTACTTGGAGTATGAACCTCCGTTTGG 946
Query 994 CAGGGAACCTCTGGCTAACAAAATCTCGGATCTCGCGTCAAGAGTTCCTGAGCTAATGAC 1053
| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 947 CCGGGAACCTCTGGCTAACAAAGTCTCGGATCTGGCGTCAAGATTTCCTGAGCTAATGAC 1006
Query 1054 ATACCGGAGCTGTGATCTTCTTCCTTCAAGTTGGGTCTCTGTGTCATGGTATCCAATATA 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ATACCGGAGCTGTGATCTTCTTCCTTCAAGTTGGGTCTCTGTGTCATGGTATCCAATATA 1066
Query 1114 CAGAATACCGGTTGGTCCAACACTACAAAATCTTGATGCCTGCTTTCTAACTTTTCACTC 1173
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1067 CAGAATACCGGTTGGTCCAACACTACAAAATCTCGATGCCTGCTTTCTAACTTTTCACTC 1126
Query 1174 TCTCTCAACAGCACCTCCTCAAAGTGCTATGGGTTGTAGTGATTCACAACCATCCACAAA 1233
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1127 TCTCTCAACAGCACCTCCTCAAAGTGCTATGGGTTGTAGTGATTCGGAACCATCCACAAA 1186
Query 1234 GCTACCGTTGCCTACTTTTGGACTCGCATCTTATAAGCTGAAAGTATCTGTGTGGAACCA 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GCTACCGTTGCCTACTTTTGGACTCGCATCTTATAAGCTGAAAGTATCTGTGTGGAACCA 1246
Query 1294 AAATAGAATTCAAGAGTCCCAAAAGATGACTTCTTTGCTACAAGCTGCAGATAAATGGCT 1353
|||||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 1247 AAATAGAACTCAAGAGTCGCAAAAGATCACTTCTTTACTACAAGCTGCAGATAAATGGCT 1306
Query 1354 CAAGCGTCTGCAAGTTGATCATCCAGACTACAGATTCTTCACCTCTAACAGTCCACAAAT 1413
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1307 CAAGCGTCTGCAAGTTGATCATCCAGACTACAGATTCTTCACCTCTAACAGCCCACAAAT 1366
Query 1414 GAGGTGAAAATGAAAGATACATTCTTGACCATGGATTTGGCTCTGGTCTGATCAAAAGAC 1473
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1367 GAGGTGAAAATGAAAGATACTTTCTTGACCATCGATTTGGCTCTGGTCTGATCTAAAGAC 1426
Query 1474 CCATTATCTGCTGCTCTTACTTCACATATAAAGTCTCTCT-T---ACACTGAAGAACCAC 1529
|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 1427 CCATTATCTGCTGCTCTTACTTCACACATAAAGTCTCTCTCTCTTACACTGAAGAACCAC 1486
Query 1530 CAAATAGTGGTTAGACTCTTGCGTGTTTTTCAGGCGATTTAAGAGTCTCTGCTGTTTCGT 1589
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 CAAATAGTGGCCAGACTCTTGCGTGTTTTTCAGGCGATTTAAGAGTCTCTGCTGTTTCGT 1546
Query 1590 TTCCAGAAGATGCTTTGTGAATTGTAGCCTAATCTTCCTCTTTCTTCTTCTGAAACTTAG 1649
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 1547 TTCCAGAAGATGCTTTGTGAATTGTAGCCTAATCTTCCT-TTT-T-CTTCTGAAACTTAG 1603
Query 1650 TCTTTTGATTTTCCCTGAATAAGGATTTGAGGAGCCCATATAGTGAAATTTGCGAGGAGT 1709
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1604 TCTTTTGCTTTTCCCTGAATAAGTATTTGAGGAGCCCATATAGTGAAATTTGCGAGGAGT 1663
Query 1710 GTTTTTGTAATGTTGAGATGCAACACTTTTTGTGATACAATTTGATTGCTGAACTGATGA 1769
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1664 GTTTTTGTAATGTTGAGATGCAACACTTTTTGTGATACAATTTGATTACTGAACTGA--A 1721
Query 1770 AACACAGGGTTG 1781
| |||||| |||
Sbjct 1722 A-CACAGGTTTG 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5