BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49230.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916495 jgi|Araly1|916495|Al_scaffold_0008_1246 942 0.0
> Ahg916495 jgi|Araly1|916495|Al_scaffold_0008_1246
Length=636
Score = 942 bits (510), Expect = 0.0
Identities = 598/640 (93%), Gaps = 8/640 (1%)
Strand=Plus/Plus
Query 123 ATGGATTCGAATTCATGGATCAATTGTCC-CCCTGTGTTTTCATCATCGCCTTCTTCACG 181
||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct 1 ATGGATTCGAATTCATGGATCAATTGTCCTCCC-GTGTTTTCATCATCGTCTTCTTCACG 59
Query 182 CCGTTACCAATCTCGATCAGATTTGTATTTGGGAGATGTTGAAGGAGAAGACGATTTGAA 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GCGTTACCAATCTCGATCAGATTTGTATTTGGGAGATGTTGAAGGAGAAGACGATTTGAA 119
Query 242 AGCTGAGTTTATGTGTCCTTTTTGTGCAGATGAGTTTGATATTGTTGGTCTTTGTTGTCA 301
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCAGAGTTTATGTGTCCGTTTTGTGCAGATGAGTTTGATATTGTTGGTCTTTGTTGTCA 179
Query 302 TATTGATGTGAATCATCCTGTTGAAGCTAAGAATGGGGTTTGTCCTGTCTGCACAAAGAA 361
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 180 TATTGATGTGAATCATCCTGTGGAGGCTAAGAATGGGGTTTGTCCTGTCTGCACAAAGAG 239
Query 362 GGTGGGATTGGACATTGTTGGCCATATAACAACGCAACACGGGAACGTATTTAAGGTGCA 421
||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 240 GGTTGGATTGGACATTGTTGGCCATATTACAACGCAACACGGGAGCGTATTTAAGGTGCA 299
Query 422 GCGAAGAAGAAGGTTGCGTAAAGGTGGATATAGCTCTACCTATCTTACTCTTAAAAAAGA 481
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 300 GCGAAGGAGAAGGTTGCGTAAAGGTGGATATAGCTCTGCCTATCTTACGCTTAAAAAGGA 359
Query 482 GCTTCGAGAAGCTAACTTACAGTCTCTTGGAGGGTCTTCCACTTTCATTCCCTCTTCCAA 541
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 360 GCTTCGAGAAGCTAACTTACAGTCTTTTGGAGGATCTTCCACTTTCATTCCCTCTTCCAA 419
Query 542 TATAGATTCTGATCCTCTACTCTCATCCTTTATGTTTAAACCCCCTTCGGCTATACCTAT 601
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 420 TATAGATTCTGATCCTCTACTCTCATCCTTTATGTTTAAACCTCCTTCGGCTATACCCAT 479
Query 602 CACTGAAGGAGACTCGGTAGCACAA-GTCTCACCTAAGGACACCTCTAAAAGCAAAATAC 660
| |||||||||||||| ||||| | || ||||||||||||||| |||||||||| ||||
Sbjct 480 CGCTGAAGGAGACTCGTTAGCA-ATTGTTTCACCTAAGGACACCCCTAAAAGCAACATAC 538
Query 661 AACAAGAATCA-TTCTCAAACGAAGATCAAGAGAAGGC-AAAGAAGAGCAAGTTTGTGCG 718
||||| |||| || || | |||||||||||||||||| ||| |||||| |||||||||
Sbjct 539 GACAAGTATCACTT-TCCATCGAAGATCAAGAGAAGGCGAAA-AAGAGCGAGTTTGTGCA 596
Query 719 GGGCTTGCTTTGGTCAACCATGCTTGAAGACAAGTTCTAA 758
|||| |||||||||| ||||||||||||||||| |||||
Sbjct 597 GGGCATGCTTTGGTCTACCATGCTTGAAGACAACATCTAA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5