BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49240.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357174 jgi|Araly1|357174|fgenesh1_pg.C_scaffold_8000961 1011 0.0
> Ahg357174 jgi|Araly1|357174|fgenesh1_pg.C_scaffold_8000961
Length=843
Score = 1011 bits (547), Expect = 0.0
Identities = 738/828 (89%), Gaps = 21/828 (3%)
Strand=Plus/Plus
Query 16 ATGGCTGAGATATTGGATCACCGTGGAG-TCTTG--ACCGACGGTGATGATGGTCCATTT 72
|||||| ||| |||||| |||||||||| | | | | |||| | |||||||||||||
Sbjct 1 ATGGCTAAGAAATTGGAGCACCGTGGAGTTATGGCTAATGACGACGGTGATGGTCCATTT 60
Query 73 AGAAAT---CTAACAAACTTCTATGATATGTTTTCAAGCAACTTTCCTGAAGGTTTGCGA 129
||| || ||| ||||||||| ||||||||| |||||||||| ||||| |||||||||
Sbjct 61 AGAGATCCACTACCAAACTTCTCCGATATGTTTCCAAGCAACTTCCCTGAGGGTTTGCGA 120
Query 130 GTGTTAGTCTTCGATGAAGATCCATCGTATCTTCTGATATTGGAGAGACATCTCCAAAAG 189
|||||||||||||||||||| ||||| |||||| ||| ||||||| | |||||||||||
Sbjct 121 ATGTTAGTCTTCGATGAAGATTCATCGCATCTTCAGATGTTGGAGACAAATCTCCAAAAG 180
Query 190 TTTCAATACCAAGTGACTATATGCAACGAAGTGAACAAAGCTATGCATACACTCCGCAAC 249
||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||| |||
Sbjct 181 TTTCAATACCAAGTGACTATATGTAACGAAGAGAACAAAGCTATGTATGCACTCCGTAAC 240
Query 250 CATAGGAATAGGTTCGACCTCGCTATGATACAAGTAAATAATGCAGAAGGTGATATATTC 309
|||||||||||||||||| ||||||| ||||||| ||||||| |||| |||||||| |||
Sbjct 241 CATAGGAATAGGTTCGACATCGCTATAATACAAGGAAATAATTCAGACGGTGATATGTTC 300
Query 310 CGGTTTCTCTCGGAAATCGGATCGGAAATGGATCTTCCAATCATCATAATATCTGAAGAC 369
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGTTTCTCTCGGAGATCGGATCGGAAATGGATCTTCCAATCATCATAATATCTGAAGAC 360
Query 370 GATTCAGTG-AAGTCGGTGAAGAAATGGATGATTAACGGTGCTGCCGACTATCTTATAAA 428
| |||||| || ||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct 361 AAGTCAGTGCAA-TCGGTGATGAAATGGATGATTAACGGTGCTACTGACTATCTTATAAA 419
Query 429 ACCGATAAGACCCGAAGATCTACGGATAGTATTCAAACATTTGGTAAAGAAGATGAGAGA 488
|||||||| ||||||||| ||||||||| |||||||||| |||||||||||| || ||||
Sbjct 420 ACCGATAAAACCCGAAGAGCTACGGATAATATTCAAACACTTGGTAAAGAAGGTGCGAGA 479
Query 489 AAGGAGGAGTGTGGTGACCGGAG-AG--GCAGAGAAAGCAGCAGGTGAGAAATCATCCTC 545
||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||
Sbjct 480 AAGGAGGAGTGTGGTGACCGGAGAAGCTGAAGAGAAAGCAGGAGGTGAGAAATCATCCTC 539
Query 546 TGTCGGAGATTCCACCATAAGAAACCCTAACAAGAGTAAAAGAAGTAGT-TGCCTTGAAG 604
||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||| |
Sbjct 540 TGTGGGAGATTCCACCATAAGAAACCCTAACAAGAGAAAAAGAAGTA-TGTGCCTTGATG 598
Query 605 CAGAAGTCAACGAGGAGGATCGTCATGATCATAATGATCGTGCTTGTGCTTCTAG-TGCC 663
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 599 CAGAAGTCAACGAGGAGGATCGTCATGATCATAATGATCGTGCTTGTGCTGCTAGCT-CT 657
Query 664 AAGAAAAGACGAGTCGTTTGGGACGA-GGAGCTTCACCAAAACTTTCTCAACGCCGTGGA 722
||||||||||||||||| ||| || | |||||||||| |||| ||| || ||||||||||
Sbjct 658 AAGAAAAGACGAGTCGTGTGG-ACCAAGGAGCTTCACAAAAAGTTTGTCGACGCCGTGGA 716
Query 723 TTTTCTTGGACTCGA-AAGAGCTGTTCCCaaaaaaaTATTAGATG-TTATGAAGGTTGAT 780
| |||||||||||| || |||||||||||| ||||| ||||| | ||||||| |||||
Sbjct 717 ATATCTTGGACTCGATAA-AGCTGTTCCCAAGAAAATTTTAGA-GCTTATGAATGTTGAA 774
Query 781 TACATCAGTCGAGAAAACGTAGCCAGTCATCTTCAGGTAACGTTTCTT 828
|| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 775 AACCTCAGTCGAGAAAACGTAGCCAGCCATCTTCAGGTAACGTTTCTT 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5