BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49240.1 Length=879 Score E Sequences producing significant alignments: (Bits) Value Ahg357174 jgi|Araly1|357174|fgenesh1_pg.C_scaffold_8000961 1011 0.0 > Ahg357174 jgi|Araly1|357174|fgenesh1_pg.C_scaffold_8000961 Length=843 Score = 1011 bits (547), Expect = 0.0 Identities = 738/828 (89%), Gaps = 21/828 (3%) Strand=Plus/Plus Query 16 ATGGCTGAGATATTGGATCACCGTGGAG-TCTTG--ACCGACGGTGATGATGGTCCATTT 72 |||||| ||| |||||| |||||||||| | | | | |||| | ||||||||||||| Sbjct 1 ATGGCTAAGAAATTGGAGCACCGTGGAGTTATGGCTAATGACGACGGTGATGGTCCATTT 60 Query 73 AGAAAT---CTAACAAACTTCTATGATATGTTTTCAAGCAACTTTCCTGAAGGTTTGCGA 129 ||| || ||| ||||||||| ||||||||| |||||||||| ||||| ||||||||| Sbjct 61 AGAGATCCACTACCAAACTTCTCCGATATGTTTCCAAGCAACTTCCCTGAGGGTTTGCGA 120 Query 130 GTGTTAGTCTTCGATGAAGATCCATCGTATCTTCTGATATTGGAGAGACATCTCCAAAAG 189 |||||||||||||||||||| ||||| |||||| ||| ||||||| | ||||||||||| Sbjct 121 ATGTTAGTCTTCGATGAAGATTCATCGCATCTTCAGATGTTGGAGACAAATCTCCAAAAG 180 Query 190 TTTCAATACCAAGTGACTATATGCAACGAAGTGAACAAAGCTATGCATACACTCCGCAAC 249 ||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||| ||| Sbjct 181 TTTCAATACCAAGTGACTATATGTAACGAAGAGAACAAAGCTATGTATGCACTCCGTAAC 240 Query 250 CATAGGAATAGGTTCGACCTCGCTATGATACAAGTAAATAATGCAGAAGGTGATATATTC 309 |||||||||||||||||| ||||||| ||||||| ||||||| |||| |||||||| ||| Sbjct 241 CATAGGAATAGGTTCGACATCGCTATAATACAAGGAAATAATTCAGACGGTGATATGTTC 300 Query 310 CGGTTTCTCTCGGAAATCGGATCGGAAATGGATCTTCCAATCATCATAATATCTGAAGAC 369 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGGTTTCTCTCGGAGATCGGATCGGAAATGGATCTTCCAATCATCATAATATCTGAAGAC 360 Query 370 GATTCAGTG-AAGTCGGTGAAGAAATGGATGATTAACGGTGCTGCCGACTATCTTATAAA 428 | |||||| || ||||||| |||||||||||||||||||||| | |||||||||||||| Sbjct 361 AAGTCAGTGCAA-TCGGTGATGAAATGGATGATTAACGGTGCTACTGACTATCTTATAAA 419 Query 429 ACCGATAAGACCCGAAGATCTACGGATAGTATTCAAACATTTGGTAAAGAAGATGAGAGA 488 |||||||| ||||||||| ||||||||| |||||||||| |||||||||||| || |||| Sbjct 420 ACCGATAAAACCCGAAGAGCTACGGATAATATTCAAACACTTGGTAAAGAAGGTGCGAGA 479 Query 489 AAGGAGGAGTGTGGTGACCGGAG-AG--GCAGAGAAAGCAGCAGGTGAGAAATCATCCTC 545 ||||||||||||||||||||||| || | ||||||||||| |||||||||||||||||| Sbjct 480 AAGGAGGAGTGTGGTGACCGGAGAAGCTGAAGAGAAAGCAGGAGGTGAGAAATCATCCTC 539 Query 546 TGTCGGAGATTCCACCATAAGAAACCCTAACAAGAGTAAAAGAAGTAGT-TGCCTTGAAG 604 ||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||| | Sbjct 540 TGTGGGAGATTCCACCATAAGAAACCCTAACAAGAGAAAAAGAAGTA-TGTGCCTTGATG 598 Query 605 CAGAAGTCAACGAGGAGGATCGTCATGATCATAATGATCGTGCTTGTGCTTCTAG-TGCC 663 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | Sbjct 599 CAGAAGTCAACGAGGAGGATCGTCATGATCATAATGATCGTGCTTGTGCTGCTAGCT-CT 657 Query 664 AAGAAAAGACGAGTCGTTTGGGACGA-GGAGCTTCACCAAAACTTTCTCAACGCCGTGGA 722 ||||||||||||||||| ||| || | |||||||||| |||| ||| || |||||||||| Sbjct 658 AAGAAAAGACGAGTCGTGTGG-ACCAAGGAGCTTCACAAAAAGTTTGTCGACGCCGTGGA 716 Query 723 TTTTCTTGGACTCGA-AAGAGCTGTTCCCaaaaaaaTATTAGATG-TTATGAAGGTTGAT 780 | |||||||||||| || |||||||||||| ||||| ||||| | ||||||| ||||| Sbjct 717 ATATCTTGGACTCGATAA-AGCTGTTCCCAAGAAAATTTTAGA-GCTTATGAATGTTGAA 774 Query 781 TACATCAGTCGAGAAAACGTAGCCAGTCATCTTCAGGTAACGTTTCTT 828 || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 775 AACCTCAGTCGAGAAAACGTAGCCAGCCATCTTCAGGTAACGTTTCTT 822 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32556971118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5