BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49270.1
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494988 jgi|Araly1|494988|fgenesh2_kg.8__804__AT5G49270.1 3286 0.0
> Ahg494988 jgi|Araly1|494988|fgenesh2_kg.8__804__AT5G49270.1
Length=2140
Score = 3286 bits (1779), Expect = 0.0
Identities = 2028/2149 (94%), Gaps = 13/2149 (1%)
Strand=Plus/Plus
Query 4 TTCTTTCTCCAAGTAAACTTAACTTTCTCTGGAGAAAGACACAATGGGCGTTCTCCTTCC 63
|||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||
Sbjct 2 TTCTTTCTCCAAGTAAACCTAACTTTCTTTGGAGAACGACACAATGGGCTTTCTCCTTCC 61
Query 64 GATATTCTTCGGAGTGTTACTCTTATTCACCGTTACTCCACCGTCTATGTCTCAGCTTCC 123
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 62 GATTTTATTCGGAGTGTTACTCTTATTAACCGTTACTCCACCGTCTATGTCTCAGCTTCC 121
Query 124 TCCGACAATCATGGTTCCGGCACCGGCACCGGCCCCGATTTCTCCATCAGATCTTTGCAA 183
||| ||||| | | ||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 122 TCCAACAAT-A---AT--GGCTCCGGCACCGGCCCCGACTTCGCCATCAGATCTTTGCAA 175
Query 184 CGGAATATTTCTCTCTTATGATTTCATACTCGGTCGCAAGATCCCTCCGAACGACACAGC 243
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 176 TGGAATATTTCTCTCTTATGAATTCATACTCGGTCGCAAGATCCCTCCAAACGACACAAC 235
Query 244 CGATCAGCCTTATCGGTTCGAGTCAGTTCTTACGGTTCTAAACAATGGCCGTGAAGAGTT 303
|||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||| |
Sbjct 236 CGATCAGCCTTATCGGTTTGAGTCTGTCCTTACGGTTCTAAACAATGGCCGGGAAGAGCT 295
Query 304 AAAAGAATGGAGAGTGTTTGTTGGATTCCAACACAACGAAATCCTTATTTCCGCCACAGA 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 296 AAAAGAATGGAGAGTTTTTGTTGGATTCCAACACAACGAAATCCTTATTTCCGCCACCGA 355
Query 364 TGCGTTAATAGTCAACGGGACAGAGCTTCCTGCTTTGGTAGGAAATGGTACCATCTTCGG 423
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 356 TGCATTAATAGTCAACGGGACGGAGCTTCCTGCTTTGGTAGGAAATGGTACCATCCTCGG 415
Query 424 TGGCTATCCTGTCTCCGACCTCAAAACGGCTATTCAAACGGCCGGAGACTTGAAGCAAAT 483
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGGCTATCCGGTCTCCGACCTCAAAACGGCTATTCAAACGGCCGGAGACTTGAAGCAAAT 475
Query 484 GACGGCTGAGATTGAGCTTGTCGGGACTCAGTTCATGGTGGCTCCTCCGGCGGTTCCTTT 543
|||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 476 GACGGCTGAGATCGAACTTGTCGGGACTCAGTTCATGGTGGCCCCTCCGGCGATTCCTTT 535
Query 544 GCCATCCAACATATCGCTTGTTAACGAGGGTTGGCTCTGTCCTGTGCCTACTCTTCAAAG 603
||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 536 GCCGTCCAACATATCGCTTGTTAACGATGGTTGGCTCTGTCCTGAGCCTACTCTTCAAAG 595
Query 604 CAAAAGAGAACTAACGACGTGCTGCAT-ACGAGACGCGAGCATTATAGTCAACACAACAA 662
||||||||| |||||||| |||||||| | ||||| | | ||||| ||||||||||||||
Sbjct 596 CAAAAGAGAGCTAACGACCTGCTGCATGA-GAGACACAAACATTACAGTCAACACAACAA 654
Query 663 TCACCACCAAATTCCTCCCACGACAACCCGGAGACTTGACCATAATGTACGACGTGATCC 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCACCACCAAATTCCTCCCACGACAACCCGGAGACTTGACCATAATGTACGACGTGATCC 714
Query 723 GAGCCTACGACCAGAACTACCTAACTGAAGTAACCATGGAAAACCACAACCCGCTAGGCA 782
||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 715 GAGCCTACGACCAGAACTACCTAACCGAAGTAACCATGGAAAACCACAATCCACTAGGCC 774
Query 783 GGCTTGACCATTGGGAGCTTAGTTTCGATTGGATGCGAGACGAGTTCATACAAAAAATGC 842
| || ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 775 GACTCGACCATTGGGAGCTTAGTTTCGACTGGATGCGAGACGAGTTCATACAGAAGATGC 834
Query 843 AAGGCGCATATCCAACGGTCGTGGACGCCACAAAATGCATCTTTGGTCCTCAGTCCCTAA 902
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 835 AAGGCGCATATCCAACGGTCGTGGACGCCACGAAATGCATCTTTGGTCCTCAGTCTCTAA 894
Query 903 TCTACACTGGTCTAGATTTCGCTGACGTTCTCACATGTGAAAGAAGACCAATCATCATAG 962
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 895 TCTACACTGGTCTAGATTTCGCTGACGTTCTCACATGTGAGAGACGACCAATCATCATAG 954
Query 963 ACTTGCCTCCAACCAAAAAAGATGACTCTACTTTAGGAAATATTCCTTCTTGCTGCAGAA 1022
|||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 955 ACTTGCCTCCGACCAAAAAAGATGACACTACTTTAGGCAATATTCCTTCTTGCTGCAGAA 1014
Query 1023 ACGGTACCATCTTACCACGTATCATGGACCCTTCCAAATCAGTCTCCGTCTTCACGATGC 1082
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ATGGTACAATCTTACCACGTATCATGGACCCTTCCAAATCAGTCTCCGTCTTCACGATGC 1074
Query 1083 AAGTTGCCAAAATGCCTCCTGATTTCAACCGATCCGCGCTTTTCCCACCGCAGAACTGGA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AAGTTGCCAAAATGCCTCCTGATTTCAACCGATCCGCGCTTTTCCCACCGCAGAACTGGA 1134
Query 1143 GGATTAAAGGGACGCTAAACCCGGATTACTCGTGCGGGCCACCCGTTCGGGTAACCCCGA 1202
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1135 GGATTAAAGGGACGTTAAACCCGGATTACTCGTGCGGGCCACCCGTTCGGGTAAGCCCGA 1194
Query 1203 CTTTTTATCCGGATCCGAGTGGTATGCCGACCAACAAATCATCTTTCGCCAGTTGGCAGA 1262
||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||
Sbjct 1195 CTTTTTATCCGGATCCGAGCGGTATGCCTACTAACAAATCATCTTTCGCCAGCTGGCAGA 1254
Query 1263 TCGTATGCAACATCACGCAAGCCAAAACCGAGATACCAAAATGTTGTGTCTCCTTCTCTG 1322
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1255 TTGTATGCAACATCACGCAAGCCAAAACCGAGATACCAAAATGTTGCGTCTCCTTCTCTG 1314
Query 1323 CTTTCTTCAACGACTCTATCATCCCTTGTAACACTTGCGCTTGTGGTTGCGTTTCCGAAA 1382
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1315 CTTTCTTCAACGACTCTATCATCCCTTGTAACACTTGCGCTTGCGGTTGCGTGTCGGAAA 1374
Query 1383 CGCGACGCACATGCAGTGCAGAAACTCCGTCTCTTCTCATCCCTCCAGACGCTCTTCTCT 1442
|||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1375 CGCGACGCACCTGCAGCGCGGAGTCTCCGTCTCTTCTCATCCCTCCAGACGCTCTTCTCT 1434
Query 1443 TACCTTTCGAAAACAGAACCGCTCTAACGCTTGCTTGGAACGCACTCAAACACAAAACCC 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TACCTTTCGAAAACAGAACCGCTCTAACGCTTGCTTGGAACGCACTCAAACACAAAACCC 1494
Query 1503 TACCTAATCCAATGCCGTGTGGGGACAATTGCGGTGTATCGATTAACTGGCACATGGCGT 1562
||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1495 TACCTAACCCGATGCCGTGTGGCGACAATTGCGGTGTATCAATTAACTGGCACATGGCGT 1554
Query 1563 CGGATTATAGAGGTGGTTGGACAGTGAGGATCACGATTTTCAACTGGGGAGAGATAGATT 1622
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1555 CGGATTATAGAGGTGGTTGGACCGTGAGGATCACGATTTTCAACTGGGGAGAAATCGATT 1614
Query 1623 TTCCCAACTGGTTCCTTGCGGTTCAGATGAAGAAACCGGCGCTTCTAGGGTTCGAGAAAG 1682
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1615 TCCCCAACTGGTTCCTCGCGGTTCAGATGAAAAAACCGGCGCTTCTAGGGTTCGAAAAAG 1674
Query 1683 CCTACTCGTTTAACGCGAGTCTCCTTAGCGTGGACGGAGGTGTAAACAACACCATCTTCA 1742
||||||| || ||||| |||||||| ||||||||||||||||| |||||||| || || |
Sbjct 1675 CCTACTCATTCAACGCAAGTCTCCTAAGCGTGGACGGAGGTGTCAACAACACGATTTTTA 1734
Query 1743 TGGAAGGTCTTCCGGGTCTAGATTATCTTGTGGCGGAGGCTGATGAAAAAGATCCAAAGA 1802
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 TGGAAGGTCTTCCTGGTCTGGATTATCTTGTGGCGGAGGCTGATGAAAAAGATCCAAAGA 1794
Query 1803 AGAAGAATATTAGGATTCCTGGTAAACAACAATCCGTGATACAGTTCAGCAAGAAACTCA 1862
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1795 AGAAGAATATTAGGATTCCGGGTAAACAACAATCGGTGATACAGTTCAGCAAGAAACTTA 1854
Query 1863 CGCCGGGGATTAATGTGGCGGAACGTGACGGGTTTCCGGCGAAAGTGATATTTAACGGTG 1922
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1855 CGCCGGGGATTAATGTGGCGGAACGTGACGGGTTTCCGGCGAAAGTGATATTTAACGGCG 1914
Query 1923 AGGAATGTTTGCTTCCTGATCTGCTTCCGATGGCTAGTGGTGGCAGACGAAATGGGGCTA 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 AGGAATGTTTGCTTCCTGATCTGCTTCCGATGGCTAGTGGTGGCAGACGAAATGGGGCTA 1974
Query 1983 TCACGGTTTTGTCCTTTATAACGTTTTATGTTGCGGCGTTTATGGTTCTATTATAAGCTT 2042
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||
Sbjct 1975 TCACGGTTTTGTCCTTTATAACGTTTTATGTTGCGGCCTTTATAATTCGGTTATAAGTTT 2034
Query 2043 TTTACTAGGGTTTTATTATACTCTGTTTTGTTGATTGATTAATTTGTTTTGTAAAATAAA 2102
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 TTTTCTAGGGTTT-ATTATACTCTGTTTTGTTGATTGATTAATTTGTTTTGTAAAATAAA 2093
Query 2103 ATTGAT--CTTTACTCTGCAGTTGTTTGTAAAACCATGCAATATTCTAG 2149
|||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2094 CCTGATTTCTTTACT--GCAGTTGTTTGTAAAACCATGCAATATTCTAG 2140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80903680380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5