BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49280.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494989 jgi|Araly1|494989|fgenesh2_kg.8__805__AT5G49280.1 1295 0.0
> Ahg494989 jgi|Araly1|494989|fgenesh2_kg.8__805__AT5G49280.1
Length=853
Score = 1295 bits (701), Expect = 0.0
Identities = 808/858 (94%), Gaps = 14/858 (2%)
Strand=Plus/Plus
Query 8 ttcttcttcttcttctttcccactcctac--tctttctccct-c-ctct-gctctctcat 62
||||||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||
Sbjct 1 TTCTTCTTCTTCTTCTTTCCCACTCCTACAGTCTTTCTCCCTCCTCTCTCGCTCTCTCAT 60
Query 63 ctacttcctctGTATATTCTTCGCACAAAATTAAGTTTCTAAATCCAGTTTCTGACAATG 122
|| ||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||
Sbjct 61 CTTCTTCCTCTGTATATT-TT-ACACAAAACTAAGTTTCTAAATCCAATTTCTGACAATG 118
Query 123 GAAACAAACCATTTATACACTTTGTCTACACTTGTTGTTATGCTGCTAGTGTCAGTGACA 182
||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 119 GAAACAAACCATTTATACACTTTTTCTACACTTGTTGTTATACTGCTAATGTCAGTGACA 178
Query 183 CCGACAGTGACATCAAAAGACGAGGTTGTTTCTTGTACAATGTGTTCTTCATGCGACAAT 242
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCGACAGTAACATCTAAAGACGAGGTTGTTTCTTGTACAATGTGTTCTTCATGCGACAAT 238
Query 243 CCATGTAGTCCTGTCCAATCATCTCCTCCGCCACCTTCTCCTCCACCACCGTCAACCCCC 302
||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 239 CCATGTAGTCCCGTCCAATCTTCTCCACCGCCCCCTTCTCCTCCACCACCGTCAACCCCC 298
Query 303 ACAACCGCATGTCCTCCCCCTCCTTCTCCTCCAAGCTCCGGTGGCGGTAGCTCTTACTAT 362
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACGACCGCATGTCCTCCCCCTCCTTCTCCTCCAAGCTCCGGTGGCGGTAGCTCTTACTAT 358
Query 363 TACCCTCCTCCTTCTCAGTCCGGTGGAGGCAGTAAATACCCTCCACCATACGGTGGCGGT 422
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 359 TACCCTCCTCCTTCTCAGTCCGGTGGAGGCGGCAAATACCCTCCACCTTACGGTGGCGGT 418
Query 423 GGTCAAGGTTATTACTATCCTCCGCCGTATTCAGGAAACTATCCTACGCCGCCTCCGCCG 482
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 GGTCAAGGTTATTACTATCCTCCGCCGTATTCAGGAAACTATCCTATGCCGCCTCCGCCG 478
Query 483 AATCCGATCGTCCCTTATTTCCCGTTTTACTATCATACTCCACCACCAGGTTCTGGCTCA 542
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 479 AATCCGATCGTCCCTTATTTTCCGTTTTACTATCATACTCCACCACCAGGTTCTGGTTCA 538
Query 543 GATCGGTTTATGAGTTCTTACTCTATTATTTTTGCTCTTTTTGCTGTCTTTCTCTGTTTA 602
||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 539 GATCGGTTTATGAGTTCTTGTTCTATTATTTTTACTTTTTTTGCTGTCTTTCTCTGTTTA 598
Query 603 GTGTGACGGA-AAATAGTCGGAAAATTCGCCGGGAAAATGACGAAG-AAAAAGTCGAAAT 660
|||||||||| ||||| |||| ||||||||| ||||| | | |||| ||||| |||||||
Sbjct 599 GTGTGACGGATAAATATTCGG-AAATTCGCC-GGAAATTTATGAAGAAAAAAATCGAAAT 656
Query 661 AATGTGGCAGATCCGTAGATCTATAAATCTTTAGATTTCTTTGATCATGGAAACTAA-AT 719
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| || ||
Sbjct 657 AATGTGGCAGATCGGTAGATCTATAAATGTTTAGATATCTTTGATCATGGAAAC-AAGAT 715
Query 720 GATGTTGGATCTTTTACTTTCTTCGATCTGTTTTAACTTTTTCTTTTGTTGTTGACAATT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GATGTTGGATCTTTTACTTTCTTCGATCTGTTTTAACTTTTTCTTTTGTTGTTGACAATT 775
Query 780 TGTATTTAATTGTTCTTGATTATTAACATA-TTAATTACTCGTTATTCAGATTTCAAAAA 838
|||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 776 TGTATTTAATTGATCTTGACAATTAACATACTTAATTACTCGTTATTCAGATTTCAGAAA 835
Query 839 TAAAGAATTGTTACTTTC 856
||||||||||||||||||
Sbjct 836 TAAAGAATTGTTACTTTC 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5