BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G49300.1

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949422 jgi|Araly1|949422|scaffold_801309.1                        473    5e-133


> Ahg949422 jgi|Araly1|949422|scaffold_801309.1
Length=376

 Score =  473 bits (256),  Expect = 5e-133
 Identities = 298/318 (94%), Gaps = 3/318 (1%)
 Strand=Plus/Plus

Query  325  AAGAAGACTTGTGCTGATTGTGGAACCAGTAAAACTCCTCTTTGGCGTGGTGGTCCTGTT  384
            ||||||||||||||||||||||| || || ||||| |||||||||||| ||||||||| |
Sbjct  42   AAGAAGACTTGTGCTGATTGTGGTACAAGCAAAACCCCTCTTTGGCGTAGTGGTCCTGCT  101

Query  385  GGTCCAAAGTCGTTGTGTAACGCGTGTGGGATCagaaacagaaagaagagaagaggagga  444
            ||||| ||||||||||||||||||||||||||||||||||| |||||||| | | |||||
Sbjct  102  GGTCCTAAGTCGTTGTGTAACGCGTGTGGGATCAGAAACAGGAAGAAGAG-A-A-GAGGA  158

Query  445  acagaagataataagaaattaaagaaaTCGAGTTCTGGCGGCGGAAACCGTAAATTTGGT  504
            ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct  159  ACAGAGGATAATAAGAAATTAAAGAAATCGAGTTCCGGCGGCGGAAACCCTAAATTGGGT  218

Query  505  GAATCGTTAAAACAGAGTTTGATGGATTTGGGGATAAGGAAGAGATCAACGGTGGAGAAG  564
            ||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||
Sbjct  219  GAATCGTTAAAACAGAGGTTGATGGATTTTGGGATGACGAAGAGATCAACGGTGGAGAAG  278

Query  565  CAACGACAGAAGCTTGGTGAAGAAGAACAAGCCGCTGTGTTACTCATGGCTCTTTCTTAT  624
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  279  CAACGACGGAAGCTTGGTGAAGAAGAACAAGCCGCTGTGTTACTCATGGCTCTTTCTTAT  338

Query  625  GGCTCTGTTTACGCTTAG  642
            ||||||||||||||||||
Sbjct  339  GGCTCTGTTTACGCTTAG  356


 Score = 69.4 bits (37),  Expect = 3e-11
 Identities = 39/40 (98%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  250  TTGGTTGATTCAGAAACCATGAAAACAAGAGCTGAAGATA  289
            ||||||||||||||||||||||||||||||||| ||||||
Sbjct  3    TTGGTTGATTCAGAAACCATGAAAACAAGAGCTCAAGATA  42



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23521839789


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5