BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49300.1 Length=642 Score E Sequences producing significant alignments: (Bits) Value Ahg949422 jgi|Araly1|949422|scaffold_801309.1 473 5e-133 > Ahg949422 jgi|Araly1|949422|scaffold_801309.1 Length=376 Score = 473 bits (256), Expect = 5e-133 Identities = 298/318 (94%), Gaps = 3/318 (1%) Strand=Plus/Plus Query 325 AAGAAGACTTGTGCTGATTGTGGAACCAGTAAAACTCCTCTTTGGCGTGGTGGTCCTGTT 384 ||||||||||||||||||||||| || || ||||| |||||||||||| ||||||||| | Sbjct 42 AAGAAGACTTGTGCTGATTGTGGTACAAGCAAAACCCCTCTTTGGCGTAGTGGTCCTGCT 101 Query 385 GGTCCAAAGTCGTTGTGTAACGCGTGTGGGATCagaaacagaaagaagagaagaggagga 444 ||||| ||||||||||||||||||||||||||||||||||| |||||||| | | ||||| Sbjct 102 GGTCCTAAGTCGTTGTGTAACGCGTGTGGGATCAGAAACAGGAAGAAGAG-A-A-GAGGA 158 Query 445 acagaagataataagaaattaaagaaaTCGAGTTCTGGCGGCGGAAACCGTAAATTTGGT 504 ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| Sbjct 159 ACAGAGGATAATAAGAAATTAAAGAAATCGAGTTCCGGCGGCGGAAACCCTAAATTGGGT 218 Query 505 GAATCGTTAAAACAGAGTTTGATGGATTTGGGGATAAGGAAGAGATCAACGGTGGAGAAG 564 ||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||| Sbjct 219 GAATCGTTAAAACAGAGGTTGATGGATTTTGGGATGACGAAGAGATCAACGGTGGAGAAG 278 Query 565 CAACGACAGAAGCTTGGTGAAGAAGAACAAGCCGCTGTGTTACTCATGGCTCTTTCTTAT 624 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 279 CAACGACGGAAGCTTGGTGAAGAAGAACAAGCCGCTGTGTTACTCATGGCTCTTTCTTAT 338 Query 625 GGCTCTGTTTACGCTTAG 642 |||||||||||||||||| Sbjct 339 GGCTCTGTTTACGCTTAG 356 Score = 69.4 bits (37), Expect = 3e-11 Identities = 39/40 (98%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 250 TTGGTTGATTCAGAAACCATGAAAACAAGAGCTGAAGATA 289 ||||||||||||||||||||||||||||||||| |||||| Sbjct 3 TTGGTTGATTCAGAAACCATGAAAACAAGAGCTCAAGATA 42 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23521839789 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5