BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49310.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477986 jgi|Araly1|477986|fgenesh2_kg.3__687__AT3G06720.1 824 0.0
Ahg949424 jgi|Araly1|949424|scaffold_801311.1 327 1e-88
> Ahg477986 jgi|Araly1|477986|fgenesh2_kg.3__687__AT3G06720.1
Length=2193
Score = 824 bits (446), Expect = 0.0
Identities = 1037/1316 (79%), Gaps = 66/1316 (5%)
Strand=Plus/Plus
Query 207 GTTGGAGA--TAGC-GAATATGATCACTGGGGTTTTCTCGGATGATCCTTCATTGCAGCT 263
|||||||| | || | ||||| || |||||||||| || ||||||||| | ||||||||
Sbjct 445 GTTGGAGAGTTTGCAGGATATGGTCGCTGGGGTTTTGTCCGATGATCCTGCCTTGCAGCT 504
Query 264 TGAGTACACAACTCGGTTCAGGGTGGTTCTATC-ATTCGATAGAAGTCCACCTACT-GA- 320
||||| ||| |||| ||||||| | |||| || ||| || |||||||| || | | ||
Sbjct 505 TGAGTCCACTACTCAGTTCAGGAAGCTTCTCTCTATT-GAGAGAAGTCCTCC-AATCGAG 562
Query 321 TAATGTGATAAAAT-CTGGAGTTGTGCCACGTTTTGTAGAGTTTCTTAAGAAGGATGATA 379
|| ||||| | | |||| ||||| || || ||||| |||||||||||||| || |||
Sbjct 563 GAA-GTGAT-AGCTGCTGGTGTTGTTCCTCGGTTTGTTGAGTTTCTTAAGAAAGAAGATT 620
Query 380 ACCCTAAGCTTCAGTTTGAGGCTGCTTGGGCTTTAACAAACATTGCTTCTGGCGCATCTG 439
|||| | ||||||||||||| ||||||||| | ||||||||||| ||||| |||| |
Sbjct 621 ACCCCGCGATTCAGTTTGAGGCAGCTTGGGCTCTGACAAACATTGCATCTGGAACATCCG 680
Query 440 AGCATACCAAGGTAGTGATTGATCACGGTGTTGTGCCACTCTTTGTTCAGCTTCTTGCTT 499
| || || ||||| || || |||||| || ||| ||| ||||||| |||||||||||||
Sbjct 681 ATCACACTAAGGTTGTAATCGATCACAATGCTGTTCCAGTCTTTGTACAGCTTCTTGCTT 740
Query 500 CCCCTGA-TGATGATGTCCGTGAGCAGGCTATATGGGGACTGGGTAATGTTGCTGGTGAT 558
||||| | ||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 741 CCCCT-AGCGATGATGTCCGTGAGCAGGCTGTATGGGCTTTGGGTAACGTTGCTGGTGAT 799
Query 559 TCAATACAGTGCCGTGACT-TTGTTCTT-AACTCTGGGGCATTTATTCCACTGTTGC-AT 615
||| || ||||||||| | |||||||| | | | ||||| | |||| ||| | | ||
Sbjct 800 TCACCACGGTGCCGTGA-TCTTGTTCTTGGA-TGTAGGGCACTGCTTCCGCTGCT-CAAT 856
Query 616 CAGCTGAATAACCATGCTACATTGTCGATACTTAGAAATGCGACTTGGACTTTATCAAAC 675
||||| ||| | ||||| | |||||| || ||| ||||||| || ||||| || ||||||
Sbjct 857 CAGCTTAATGAGCATGCCAAATTGTCCATGCTTCGAAATGCCACATGGACCTTGTCAAAC 916
Query 676 TTCT-TCCGTGGCAAGCCTTCA-CCACCCTTTGACCTGGTGAAACATGTTCTCCCTGTAC 733
|||| | ||||||||||| ||| || | |||||||| |||||||| || ||| || | |
Sbjct 917 TTCTGT-CGTGGCAAGCC-TCAGCCTCACTTTGACCAGGTGAAACCTGCTCTTCCGGCCC 974
Query 734 TTAAAAGACTTGTTTATTCGGATGATGAACAAGTCTTGATAGATGCTTGCTGGGCGCTTT 793
|| || |||| || |||| |||||||| ||||||||| |||||| || ||||| || |
Sbjct 975 TTGAACGACTAATTCATTCAAATGATGAAGAAGTCTTGACAGATGCCTGTTGGGCTCTCT 1034
Query 794 CGA-ATCTGTCTGATGCTTCAAATGA-AAATATCCAAAGTGTGATCGAGGCGGGTGTTGT 851
| | | || ||||||| | ||||| ||| ||||| | ||| |||||||| ||||||||
Sbjct 1035 C-ATACCTCTCTGATGGGACCAATGACAAA-ATCCAGACTGTCATCGAGGCCGGTGTTGT 1092
Query 852 CCCAAGACTAGTTGAACTTCTCCAACA-CGCTTCTCCAGT-TGTACTTGTTCCTGCACTT 909
||||||||| ||||||||||||| || | |||||||| | ||| || |||||||||||
Sbjct 1093 CCCAAGACTTGTTGAACTTCTCCTCCATC-CTTCTCCA-TCTGTGCTAATTCCTGCACTT 1150
Query 910 CGTTGC-ATTGGGAATATAGTTTCTGGAAAT-AGTCAGCAGACTCACTGTGTGATCAATT 967
|| | |||| ||||||||| ||||| || | | | || || || || |||||||||
Sbjct 1151 CG-CACTGTTGGAAATATAGTTACTGGAGATGATTTA-CAAACACAGTGGGTGATCAATA 1208
Query 968 GTGGTGTTTTACCCGT-TCTTGCTGACCTGCTTACTCAAAACCATATGAGAGGCATAAGG 1026
|||||| | || || | |||||| || |||| ||||||||| ||| || | |||||| |
Sbjct 1209 GTGGTGCTCTA-CCTTGTCTTGCCAACTTGCTCACTCAAAACTATAAGAAAAGCATAAAG 1267
Query 1027 AGGGAAGCTTGCTGGACGATTTCAAACATCACTGCCGGTTTAGAA-GAACAAATTCAGTC 1085
| |||||||||||||||||||||||||||||| || || | || || || || ||| |
Sbjct 1268 AAGGAAGCTTGCTGGACGATTTCAAACATCACAGCAGGCA-ACAAAGATCAGATCCAGAC 1326
Query 1086 GGTTA-TTGATGCAAATTTGATT-CCATCGTTGGTCAATCTGGCA-CAACATGCTGAATT 1142
||| | |||| || ||||||||| || || |||| | |||| | ||| ||||||||||
Sbjct 1327 GGT-AGTTGAGGCTAATTTGATTGCCC-CGCTGGTGAGTCTG-CTTCAAAATGCTGAATT 1383
Query 1143 TGACATAAAGAAAGAAGCTATATGGGCAATTTCAAATGCTTCCGTG-GGTGGTTCTCCTA 1201
|||||| |||||||||||| |||||||||||||||||| | | |||||||||| |
Sbjct 1384 TGACATTAAGAAAGAAGCTGCATGGGCAATTTCAAATGCAACT-TCAGGTGGTTCTCATG 1442
Query 1202 ATCAAATCAAATACTTGGTGGAGCA-GAATTGCATAAAAGCTTTATGTGACATCCTGGTT 1260
||||||||||| || |||||||||| | || |||||||| | ||||| ||| |||| ||
Sbjct 1443 ATCAAATCAAACACCTGGTGGAGCAAGGAT-GCATAAAACCATTATGCGACCTCCTAGTA 1501
Query 1261 TGTCCAGATCTAAGAATCATCTTAGTGT-CTCTAGGTGGACTGGAAATGATTTTGATTGC 1319
|| ||||||| ||||||||| |||| | || | ||| |||||| ||||||| |
Sbjct 1502 TGCCCAGATCCAAGAATCATAACGGTGTGC-CTTGAAGGATTGGAAAACATTTTGAAGG- 1559
Query 1320 TGG-AGAGGTGGACAAGAACCT----AA----G-AGACGTGAACTGTTACTCTCAAATGA 1369
||| ||||| || |||||| | || | |||| |||||| |||| | || |||
Sbjct 1560 TGGGAGAGGCAGAGAAGAACTTGGGTAACACAGGAGACATGAACTATTACGCACAGCTGA 1619
Query 1370 TTGAAGATGCAGAAGGGCTAGAAAAGATTGAGAAC-TTGCAGCA-CCATGGCAACAATGA 1427
|||| |||||||||||||||||||||||||||||| || ||| | ||||| |||||||||
Sbjct 1620 TTGATGATGCAGAAGGGCTAGAAAAGATTGAGAACCTT-CAG-AGCCATGACAACAATGA 1677
Query 1428 GATCTACGAGAAGGCTGTGAAGATTCTGCAAACATACGGGCTTGTAGAGGAAGATG 1483
|||||| ||||||||||| || |||||| | |||||| |||||| |||||||||||
Sbjct 1678 GATCTATGAGAAGGCTGTTAAAATTCTGGAGACATACTGGCTTGAAGAGGAAGATG 1733
> Ahg949424 jgi|Araly1|949424|scaffold_801311.1
Length=373
Score = 327 bits (177), Expect = 1e-88
Identities = 261/301 (87%), Gaps = 7/301 (2%)
Strand=Plus/Plus
Query 1 ATGTCCTTGCGACCGAGCACGAAGACAGAGATCCGTCGAATCCGTTACAAAGTCTCTGTA 60
|||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||
Sbjct 21 ATGTCCTTGCGACCGAGCGCGAAGACAGAGATCCGTCGAAGCCGTTACAAGGTCTCTGTT 80
Query 61 GATGCGGAAGAAGGACGCAGAAGAAGAGAAGACTTTTTAGTCGAGATTCGCAAGAGTAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 81 GATGCGGAAGAAGGACGCAGAAGAAGAGAAGACTTTTTAGTCGAGATTCGTAAGAACAAA 140
Query 121 CGCAACGAAAATTTGATGAAGAAACGTCGTGTAAAAGTTTT-GCCTCCTGATTA-CAAGT 178
||||| |||| |||||||||||||| || | | || || | | | || |
Sbjct 141 CGCAAGGAAAGCTTGATGAAGAAACGCCGCG-ACG-GTGTTAG--TGAAGTTTTGCCTCC 196
Query 179 TGATTTCCAACGACCCCTTTGAGAGTTTGTTGGAGATAGCGAATATGATCACTGGGGTTT 238
|| || || |||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 197 TGCTT-CCGACGATCCCTTTGATAGTTTGTTGGAGATAGCGAATATGATTACTGGGGTTT 255
Query 239 TCTCGGATGATCCTTCATTGCAGCTTGAGTACACAACTCGGTTCAGGGTGGTTCTATCAT 298
|||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 256 TCTCGGATGATCCTTCATTGCAGCTTGAGTACACGACTCGGTTCAGGAAGATTCTATCAT 315
Query 299 T 299
|
Sbjct 316 T 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5