BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49320.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949425 jgi|Araly1|949425|scaffold_801312.1 1282 0.0
> Ahg949425 jgi|Araly1|949425|scaffold_801312.1
Length=814
Score = 1282 bits (694), Expect = 0.0
Identities = 772/811 (95%), Gaps = 0/811 (0%)
Strand=Plus/Plus
Query 81 ATTAGAAATTGACGAGAGACATGTCGAGAACAAGAGTGCGAGCTGTGACCCATCAAGATC 140
||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1 ATTAGAAATTGACGAGAGATATGTCGAGAGCAAGAGTACGAGCTGTGACCCATCAAGATC 60
Query 141 TTGTTCCAAACCCTAAAACCACAGATCTCAGCAGCAAAACCGGTATTTTCATCGCTGTTT 200
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TTGTTCCAAACCCGAAAACCACAGATCTCAGCAGCAAAACCGGTATTTTCATCGCGGTTT 120
Query 201 TGACAATAATCTTTGGCCTCTCCTGCTTTGTTCTCTGCCTCTATGCCGAAGCCACAAGAT 260
|||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||
Sbjct 121 TGACTATAATCTTTGGCCTCTCCTGCTTTGTTCTTTGCCTCTTTGCCGAAGCAACGAGAT 180
Query 261 CTCAGGCGACATGGGGAAGCAAAACATGCGTGTATAATGGTAGCGGGAAAACGCCGTTGT 320
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 181 CTCAGGCGACATGGGGAAGCAAAACGTGCGTGTATAACGGTAGCGGGAAAACGCCGTTGT 240
Query 321 TGTGTGGTGCGATTGCGTTTGTGGGACTAGCGGTGGCGATGGTGGGCTTCCACATGTACT 380
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 TGTGCGGTGCGATTGCGTTCGTGGGACTAGCGGTGGCGATGGTGGGCTTGCACATGTACT 300
Query 381 TACTTATCGCAGTCACCACATCGCCGTCTCTGGTTCTGGTTGAGTGGGATCCTGACTCTG 440
||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 301 TACTTATCGCAGTTACCACATCGCCACCGATGGTTCTGGTTGAGTGGGATCCTGACTCTG 360
Query 441 TTCCTGCGAAGAGGCTCACTTTTCAAGCTGCCTTCTTCTTCGTCTCAACATGGGTTTGCT 500
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCCTGCGAAGAGGCTCACGTTTCAAGCTGCCTTCTTCTTCGTCTCAACATGGGTTTGCT 420
Query 501 TTGGTGTTGGAGAGGTTCTACTGTTGGTTGCACTTAGTGTGGAATCAGGACATCTAAAGA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGGTGTTGGAGAGGTTCTACTGTTGGTTGCACTTAGTGTGGAATCAGGACATCTAAAGA 480
Query 561 ACTGGTCTAAACCAAAACCTAGTTGTCTAGTAATCCGGCAAGGCTTGTTTTCAGCGGCCG 620
|||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 481 ACTGGTCTAAGCCAAAACCGACTTGTCTAGTAATCCGACAAGGCTTGTTTTCAGCGGCCG 540
Query 621 GAGTGTTCTCACTTATAACCGTCTTTCTAGCCACGGGACTTTACCTAACCGCTCTTCAAG 680
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 GAGTGTTCTCACTTCTAACCGTCTTTCTAGCCACGGGACTTTACCTAACCGCTCTACAAG 600
Query 681 CACATCGAATCTCTAAGGATCTTGAAAACACACATAGAGAGATCATCGAGGCATCAGTTC 740
||||| ||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||
Sbjct 601 CACATAGAATCTCTAAGGATCTTCAAAATACACATAGAGAAATCCTCGAGGCATCAGTTC 660
Query 741 TTTATGCATCTCCTCCAAGATCGCCTACAAATCGGATGGCTACGGTTGCTCGAGAAGGTC 800
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 661 TTTATGCATCTCCTCCAAGATCGCCCACGAATCGGATGGCTACGGTAGCTCGAGAAGGTC 720
Query 801 TTGCTACTGTTAGAGATGAATCGACGTCTTTGGAATATCTTGTTTCTTTAAAGCAACTTG 860
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 721 CTGCTACGGTTAGAGATGAGTCGACGTCTTTGGAATATCTTGTTTCTTTAAAGCAAATTG 780
Query 861 CACATATAGTATAGTGTACAATGTATAGTAG 891
|||||||||||||||||||||||||||||||
Sbjct 781 CACATATAGTATAGTGTACAATGTATAGTAG 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5