BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49340.1
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331346 jgi|Araly1|331346|fgenesh1_pm.C_scaffold_8000689 2156 0.0
> Ahg331346 jgi|Araly1|331346|fgenesh1_pm.C_scaffold_8000689
Length=1380
Score = 2156 bits (1167), Expect = 0.0
Identities = 1311/1381 (95%), Gaps = 8/1381 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGATCTAAAGAATCTCTTCCTCATCACGAAACATCCATCAACAACACAGATCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCGGATCTAAAGAATCTCTTCCTCATCACGAAACATCCATCAACAACACAAATCTTC 60
Query 61 CTAACGtctctcttcttcctttctctcttcctcctctcctcttcttctctctcagatttc 120
| ||||||||||||||| | ||||||||||||||||| ||||||||||| || || |||
Sbjct 61 TTTACGTCTCTCTTCTTCATCTCTCTCTTCCTCCTCTCATCTTCTTCTCTATCCGACTTC 120
Query 121 tctccatcactcatcgtctctagcttcacctctcgtcttctcacagcagcaaacttcttc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCCATCGCTCATCGTCTCTAGCTTCACCTCTCGTCTTCTCACAGCAGCAAACTTCTTC 180
Query 181 tcttctccttcttctta------tacttcctctgcttcagatacaactatgtttctctct 234
||||||||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 181 TCTTCTCCTTCTTCTTATTCTTCTTCTTCCTCTGCTTCAGACACAACTATGTTTCTCTCC 240
Query 235 tctGTTTCTCCCAGAAGAATCAACGAGCCAAAGATTGATTCGGAGACCAAAGAACTCGCT 294
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 241 TCTGTTTCTCCCAGAAGAATCAACGAGCCAAAGATTGATTCGGAGACTAAAGAACTCACT 300
Query 295 TCTTGCGACATTTTTGATGGAACTTGGGTCTTTGACGATTCTGAACCGGTTTATCTTCCT 354
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TCTTGCGACATTTTTGATGGAACTTGGGTCTTCGACGATTCTGAACCGGTTTATCTTCCT 360
Query 355 GGTTATTGTCCTTTCGTTGAAGATAAATTCAACTGCTTCAAGAATGGTCGACCTGATTCG 414
||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 361 GGTTATTGTCCTTTCATTGAAGATAAATTCAATTGCTTCAAAAATGGTCGACCTGATTCG 420
Query 415 GGGTTTCTCCGTCATCGATGGCAACCTCATGGATGCTCGATTCCAAGATTCGATGGGAAG 474
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTTTTCTCCGTCATCGATGGCAACCTCATGGATGCTCGATTCCAAGATTCGATGGGAAG 480
Query 475 AAGATGTTGAAGATGCTGAGAGGGAAAAGAGTTGTTTTTGTTGGTGATTCATTGAATAGA 534
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 AAGATGCTGAAGATTCTGAGAGGGAAAAGAGTTGTTTTTGTTGGAGATTCATTGAATAGA 540
Query 535 AACATGTGGGAGTCTCTGGTTTGTTCACTTAGGTCAACATTGGAAGACAAAAACAGAGTT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACATGTGGGAGTCTCTGGTTTGTTCACTTAGGTCAACATTGGAAGACAAAAACAGAGTT 600
Query 595 TCTAAGATTAT-TGGAAAACAGAGTAATCTTCCTAACGAAGGCTTTTACGGTTTCAGGTT 653
|||| | || | |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 601 TCTAGGGTT-TCTGGAAAACAGAGTAATCTTCATAACGAAGGCTTTTACGGTTTCAGATT 659
Query 654 CAATGACTTTGAATGCTCTATTGACTTCATCAAATCACCATTCCTCGTTCAAGAATCAGA 713
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAAAGACTTTGAATGCTCTATTGACTTCATCAAATCACCATTCCTCGTTCAAGAATCAGA 719
Query 714 AGTTGTAGATGTATACGGGAAGAGAAGAGAGACACTGAGACTCGATATGATTCAAAGATC 773
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 AGTTTTAGATGTATACGGCAAGAGAAGAGAGACACTGAGACTCGATATGATTCAACGATC 779
Query 774 GATGACGAAGATATACAAAAACGCAGACATTGTTATATTTAACACTGGTCACTGGTGGAC 833
||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GATTAAGAAGATACACAAAAACGCAGACATTGTTATATTTAACACTGGTCACTGGTGGAC 839
Query 834 TCACCAGAAAACCTACGAAGGGAAAGGTTATTACCAGGAAGGAAATAGGGTTTACGAAAG 893
||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 840 TCACCAGAAAACCTATGAAGGGAAAGGTTATTTCCAGGAAGGAAATCGAGTTTACGAAAG 899
Query 894 ATTAGAAGTGAAAGAAGCTTATACAAAAGCTATTCATACATGGGCTGACTGGGTTGATTC 953
||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 900 ATTAGAAGTGAAAGAAGCTTACACAAAAGCTCTTCATACATGGGCTGATTGGGTTGATTC 959
Query 954 CAATATCAACAGTACTAAAACCAGAGTCTTCTTCGTTGGTTATTCCTCTTCACATTTTAG 1013
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAGTATCAACAGTACTAAAACCAGAGTCTTCTTCGTTGGTTATTCCTCTTCACATTTTAG 1019
Query 1014 AAAAGGGGCGTGGAATAGCGGAGGACAATGCGATGGAGAAACAAGACCGATACAGAACGA 1073
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAAAGGGGCGTGGAACAACGGAGGACAATGCGATGGAGAAACAAGACCGATACAGAACGA 1079
Query 1074 AACGTACACAGGAGTGTATCCATGGATGATGAAAGTTGTAGAATCTGTGATCTCGGAAAT 1133
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1080 GACGTACACCGGAGTGTATCCATGGATGATGAAAGTTGTGGAATCGGTGATCTCGGATAT 1139
Query 1134 GAAAACGCCTGTGTTTTACATGAACATTACGAAGATGACTTGGTACCGAACAGATGGTCA 1193
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 1140 GAAAACGCCTGTGTTTTACATGAATATTACGAAGATGACTTGGTACAGAACCGATGGTCA 1199
Query 1194 TCCGTCGGTTTACAGACAGCCCGCCGACCCCCGAGGAACTTCTCCTGCAGCGGGAATGTA 1253
||||||| |||||||||| || |||||||||||||||| | |||||||||| |||||||
Sbjct 1200 TCCGTCGATTTACAGACAACCTGCCGACCCCCGAGGAAGTACTCCTGCAGCTGGAATGTT 1259
Query 1254 CCAAGATTGTAGTCATTGGTGCTTACCTGGAGTTCCTGATTCATGGAACCAGCTTCTCTA 1313
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 CCAAGATTGTAGCCATTGGTGCTTACCTGGAGTTCCTGATTCATGGAATCAGCTTCTCTA 1319
Query 1314 CGCTACTCTGCTAGTTTCACATGGTTCCTTGCCTGACAAGTCACTTGGAAGTCTCTTGTA 1373
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CGCTACTTTGCTAGTTTCACATGGTTCCTTGCCTGACAAGTCACTTGGAAGTCTCTTGTA 1379
Query 1374 A 1374
|
Sbjct 1380 A 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51427815033
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5