BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49350.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494993 jgi|Araly1|494993|fgenesh2_kg.8__809__AT5G49350.1 706 0.0
> Ahg494993 jgi|Araly1|494993|fgenesh2_kg.8__809__AT5G49350.1
Length=946
Score = 706 bits (382), Expect = 0.0
Identities = 517/579 (89%), Gaps = 21/579 (4%)
Strand=Plus/Plus
Query 442 tggaggcggagcaggaggattaggtgggggtgggggtaatggaggtttcggaggaggagg 501
|||||| |||| ||||||||||||||||||||| | ||| ||||| ||||||||||| ||
Sbjct 373 TGGAGGAGGAGGAGGAGGATTAGGTGGGGGTGGTGTTAACGGAGGCTTCGGAGGAGGCGG 432
Query 502 aTTAGGCGGCGGGGGATTAGGTGGGGAAGATCCACCGGAGATAGTTGCCAAAGCTTTGGA 561
| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 433 --T-GGCGGCGGCGGCTTAGGTGGGGAAGGTCCACCGGAGATAGTTGCCAAAGCTTTGGA 489
Query 562 ATGCTTAAATGAGAAACACATATACAGAGAGTGTGATGAATCATGGAGGCTAACGTTAAA 621
||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||
Sbjct 490 ATGTTTAAATGAGAAACACATATATAGAGAGTGTGAAGAAACATGGAGGCTAACGTTAAA 549
Query 622 CGGAGACCTAAATATTCCGCTGGGGAGGACAGAAGAGTTCTGTGAAGGACCATGCTTCTC 681
||||||||||||||||||| ||| ||| || || |||||||| |||||||||||||||||
Sbjct 550 CGGAGACCTAAATATTCCGGTGGCGAGTACGGAGGAGTTCTGCGAAGGACCATGCTTCTC 609
Query 682 AGAAACACATTTGGCTTTGAATTGCATTGAAGAAATTATTCACCACTACAGATTCTTTAA 741
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 610 CGAGACACATTTGGCTTTGAATTGCATTGAAGATATTATTCATCACTACAGATTCTTTAA 669
Query 742 CAGAGCCACCATTCACGACATCCGTGAAACCCTCAAGTCTGGCTGCAGCTACGGACCTGA 801
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CAGAGCAACAATTCACGACATCCGTGAAACCCTCAAGTCTGGCTGCAGCTACGGACCTGA 729
Query 802 ACGAGGTGTTTTCAACGTCTTGGAGCATATTGAAGATGAAGAAGAAAAT-GCAAGTGAGA 860
|||||||| ||||||||| ||||| |||||||||| ||||||||||||| | ||||||||
Sbjct 730 ACGAGGTGATTTCAACGTTTTGGAACATATTGAAGCTGAAGAAGAAAATAG-AAGTGAGA 788
Query 861 AGATAAAGTCAAGATTTGGGCCGTTGCT----A-T-TCAT-T--A---TTGCCTTGCTTC 908
|||||||||||| || ||| |||||||| | | | | | | ||||||||||||
Sbjct 789 AGATAAAGTCAAAATCTGGACCGTTGCTTGGGACTGTGTTGTTCACCATTGCCTTGCTTC 848
Query 909 TCTAAGACCTCTCTTAATTTTTAATCTTAGCCATTATC-TGATATACATATAT--GTTGC 965
|||||||| | |||||||||||||| |||||||||||| | |||||||||||| |||||
Sbjct 849 TCTAAGACTTTTCTTAATTTTTAATTTTAGCCATTATCAT-ATATACATATATATGTTGC 907
Query 966 TTATCTAGTTAATACAATAAATATAAACCGAACTATTTG 1004
||||||| ||||||||||||||||||||||| || ||||
Sbjct 908 TTATCTAATTAATACAATAAATATAAACCGATCTCTTTG 946
Score = 289 bits (156), Expect = 3e-77
Identities = 184/198 (93%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 1 AGCAATGGCGTTTTCATTCAACAGAGAGCTCCGGATCTCAGTCACCATTGTCACTTTTTT 60
|||||||||||||||||| | ||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1 AGCAATGGCGTTTTCATTTATCAGAGAGCTCCGGATCTCAGTGACCCTTGTCGTTTTTTT 60
Query 61 CTTCCTCTTAGTTTCCTTTCCAGGGAACACTTATAGTGAAGAAGACGATTCAGAGGTAGG 120
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 61 CTTCCTCTTAGTTTCCTTTCAAGGGAACACTTATAGTGAAGAAGATGATTCAGAGGCAGG 120
Query 121 AGGTGAAGGTGGAGGAATTGGAGGTGGCGGCACAGGATTTGGCGGTGGTGGGACTGGTGT 180
||||| |||||||||| ||||||| || || |||||||||||||||||||||||||||||
Sbjct 121 AGGTGCAGGTGGAGGAGTTGGAGGCGGAGGGACAGGATTTGGCGGTGGTGGGACTGGTGT 180
Query 181 GGGAGGCGGAGGGACAGG 198
||||||||||||||||||
Sbjct 181 GGGAGGCGGAGGGACAGG 198
Score = 161 bits (87), Expect = 7e-39
Identities = 179/220 (81%), Gaps = 20/220 (9%)
Strand=Plus/Plus
Query 296 ggtgctggtggca-gtggtggaggagga-gcaggaggattaggcggtggtgggactggtg 353
||||| ||||| | | | |||||| ||| | | |||||| |||||||||||||||||||
Sbjct 122 GGTGCAGGTGG-AGGAGTTGGAGGCGGAGGGA-CAGGATTTGGCGGTGGTGGGACTGGTG 179
Query 354 tgggaggcggagggacaggtggTGGTACTGGATTTAACGGCGGAGGGACAGGTTTTGGGC 413
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TGGGAGGCGGAGGGACAGGCGGTGGTACTGGATTTAACGGCGGAGGGACAGGTTTTGG-C 238
Query 414 CTTTTGGCGGA---GGAGGGTT-GG-G-TA-Ctggtgg-a--ggcggagcaggaggatta 463
|| ||| ||||| || || | | | ||||| | || |||||||||||||||
Sbjct 239 GGA--GGAGGAACAGGAGGTTTAGGCGGTGGC-GGTGGTAACGGAGGAGCAGGAGGATTA 295
Query 464 ggtgggggtgggggtaatggagg-tttcggaggaggagga 502
|| || | || ||||| ||||| ||| ||||||||||||
Sbjct 296 GGCGGTAGCGGTGGTAACGGAGGCTTT-GGAGGAGGAGGA 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5