BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49360.1
Length=2708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949430 jgi|Araly1|949430|scaffold_801317.1 3735 0.0
> Ahg949430 jgi|Araly1|949430|scaffold_801317.1
Length=2365
Score = 3735 bits (2022), Expect = 0.0
Identities = 2251/2364 (95%), Gaps = 5/2364 (0%)
Strand=Plus/Plus
Query 66 aaacacagatatata-aaa-aTGTCTTGTTATAATAAAGCACTATTGATCGGCAACAAAG 123
||||||||||||||| ||| ||||||||| ||||||||||| |||| |||||||||||||
Sbjct 1 AAACACAGATATATATAAACATGTCTTGTAATAATAAAGCATTATTAATCGGCAACAAAG 60
Query 124 TCGTCGTTATACTTGTATTCCTCTTATGTTTGGTTCACTCGTCAGAGTCACTTCGACCAC 183
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 61 TCGTCGTTATACTTGTATTCCTCTTATGCTTGGTTCACTCGTCAGAGTCACTTCGGCCAC 120
Query 184 TGTTTGCATGTGATCCAGCAAACGGGTTAACCCGGACGCTCCGGTTCTGTCGGGCCAATG 243
| |||||||| || || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TCTTTGCATGCGACCCGGCAAACGGGTTAACCCGGACGCTCCGGTTCTGTCGGGTCAATG 180
Query 244 TACCGATCCATGTGAGAGTTCAAGATTTGCTCGGAAGGCTCACGTTGCAGGAGAAGATCC 303
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TACCGATCCATGTGAGGGTTCAAGATTTGATCGGAAGGCTCACGTTGCAGGAGAAGATCC 240
Query 304 GCAACCTCGTCAACAATGCTGCCGCCGTACCACGTCTCGGTATTGGAGGCTATGAGTGGT 363
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 241 GCAACCTCGTCAACAATGCTGCCGCCGTTCCACGCCTCGGTATTGGAGGCTATGAGTGGT 300
Query 364 GGTCCGAGGCTCTCCACGGCATTTCCGACGTTGGTCCAGGCGCTAAGTTCGGTGGTGCTT 423
|||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||
Sbjct 301 GGTCCGAGGCTCTCCACGGCGTTTCCGACGTTGGTCCTGGCTCTAAGTTCGGTGGTGCTT 360
Query 424 TTCCCGGTGCCACCAGCTTCCCTCAGGTCATCACCACCGCAGCTTCTTTCAACCAGTCTC 483
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 361 TTCCCGGCGCCACCAGCTTCCCTCAGGTCATAACTACCGCAGCTTCTTTCAACCAGTCTC 420
Query 484 TATGGGAAGAGATCGGACGGGTGGTGTCTGATGAGGCAAGAGCTATGTACAATGGTGGCG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 TATGGGAAGAGATCGGACGGGTGGTGTCTGATGAGGCAAGAGCTATGTACAATGGAGGCG 480
Query 544 TGGCCGGTCTGACATATTGGAGTCCGAATGTGAATATCTTGAGGGACCCGCGGTGGGGCC 603
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 481 TGGCCGGTCTGACATATTGGAGTCCAAATGTGAATATATTGAGGGACCCACGGTGGGGCC 540
Query 604 GAGGCCAAGAAACTCCCGGAGAAGATCCTATCGTTGCCGCAAAATATGCCGCCAGCTACG 663
||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| |
Sbjct 541 GAGGCCAAGAAACTCCCGGAGAAGACCCTATCGTCGCTGCAAAATACGCCGCCAGCTATG 600
Query 664 TCCGGGGACTTCAGGGTACTGCTGCCGGTAACCGCCTTAAAGTCGCCGCATGTTGCAAAC 723
|||||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||
Sbjct 601 TCCGGGGACTTCAGGGCACCGCCGCCGGAAACCGCCTTAAAGTGGCCGCATGTTGCAAAC 660
Query 724 ATTACACTGCTTATGATCTTGATAATTGGAATGGCGTCGACCGTTTCCACTTCAACGCTA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATTACACTGCTTATGATCTTGATAATTGGAATGGCGTCGACCGTTTCCACTTCAACGCTA 720
Query 784 AGGTCACCCAACAAGATTTAGAGGACACATACAACGTGCCATTCAAATCATGTGTTTACG 843
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 721 AGGTCACCCAACAAGATTTAGAGGACACATATAATGTGCCATTCAAATCATGTGTTTACG 780
Query 844 AAGGAAAAGTAGCGAGTGTAATGTGTTCGTACAACCAAGTCAATGGAAAGCCCACATGTG 903
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGGAAAGGTCGCGAGTGTAATGTGTTCGTACAACCAAGTCAATGGAAAGCCCACATGTG 840
Query 904 CTGATGAAAATCTCTTAAAGAACACTATTCGTGGTCAATGGCGTCTCAATGGGTACATTG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGATGAAAATCTCTTAAAGAACACTATTCGTGGTCAATGGCGTCTCAATGGGTACATTG 900
Query 964 TCTCAGATTGTGACTCTGTTGATGTTTTCTTCAACCAACAACATTACACTAGCACTCCGG 1023
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTCAGATTGTGATTCTGTTGATGTTTTCTTCAACCAACAACATTACACTAGCACTCCGG 960
Query 1024 AAGAAGCCGCCGCCAGA-TCCATTAAAGCCGGTTTGGACTTGGACTGCGGGCCGTTTTTG 1082
| |||||||||||| | |||||||||||||||||||| ||||| || ||||||||||||
Sbjct 961 AGGAAGCCGCCGCC-GCCTCCATTAAAGCCGGTTTGGATTTGGATTGTGGGCCGTTTTTG 1019
Query 1083 GCGATTTTCACGGAAGGTGCAGTGAAGAAAGGATTGTTAACGGAGAATGACATCAATTTA 1142
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCGATTTTCACGGAAGGTGCGGTGAAGAAAGGATTGTTAACGGAGAATGACATCAATTTA 1079
Query 1143 GCACTTGCTAATACATTAACAGTCCAAATGAGACTTGGTATGTTTGATGGTAACCTTGGG 1202
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1080 GCACTTGCTAATACATTAACAGTCCAAATGAGACTTGGTATGTTTGATGGCAATCTTGGG 1139
Query 1203 CCGTACGCTAATCTTGGGCCAAGAGATGTTTGTACTCCGGCCCATAAACATTTAGCTCTT 1262
|| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||
Sbjct 1140 CCATACGCTAATCTTGGGCCACGAGATGTTTGTTCTCTGGCCCATAAACATTTAGCCCTT 1199
Query 1263 GAAGCAGCCCATCAAGGGATTGTTCTTCTCAAAAACTCTGCTCGCTCTCTTCCACTCTCC 1322
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1200 GAAGCAGCCCATCAAGGAATTGTTCTTCTCAAAAACTCTGGTCGCTCTCTTCCACTCTCC 1259
Query 1323 CCCAGACGCCACCGCACCGTCGCCGTGATTGGTCCAAACTCCGACGTCACTGAGACTATG 1382
| ||| ||||||||||||||||||||||| || || |||||||| |||||||||||||||
Sbjct 1260 CTCAGGCGCCACCGCACCGTCGCCGTGATCGGACCTAACTCCGATGTCACTGAGACTATG 1319
Query 1383 ATCGGCAACTATGCAGGGAAAGCATGCGCCTATACGTCGCCGTTGCAAGGGATTTCAAGA 1442
||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1320 ATCGGAAACTATGCAGGGAAAGCATGCGCCTATACGACGCCGTTGCAAGGAATTTCAAGA 1379
Query 1443 TACGCGAGGACACTTCACCAAGCTGGCTGTGCCGGCGTGGCTTGCAAAGGGAACCAAGGA 1502
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1380 TACGCGAGGACACTTCACCAAGCTGGTTGTGCTGGCGTGGCTTGCAAAGGGAACCAAGGA 1439
Query 1503 TTTGGTGCAGCGGAGGCAGCGGCGCGTGAAGCCGACGCGACGGTTCTTGTGATGGGATTA 1562
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TTTGGTGCGGCGGAAGCAGCAGCGCGTGAAGCCGACGCGACGGTTCTTGTGATGGGATTG 1499
Query 1563 GATCAGTCGATAGAGGCAGAGACACGAGATCGAACCGGGCTTCTCTTACCGGGTTATCAA 1622
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GATCAGTCGATAGAGGCGGAGACACGAGATCGAACCGGGCTTCTCTTACCGGGTTATCAA 1559
Query 1623 CAAGACCTAGTGACCCGTGTAGCTCAAGCTTCTAGAGGTCCAGTCATTTTGGTCCTTATG 1682
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1560 CAAGACCTAGTGACCCGTGTGGCTCAAGCTTCTAGAGGCCCAGTCATTTTGGTCCTTATG 1619
Query 1683 AGTGGTGGACCAATCGATGTAACCTTCGCTAAGAATGATCCTCGTGTTGCTGCCATCATT 1742
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 1620 AGTGGTGGACCAATCGATGTAACCTTCGCTAAGAATGATCCACGTATTTCTGCCATCATT 1679
Query 1743 TGGGCTGGGTATCCGGGTCAAGCGGGTGGAGCTGCCATCGCCAATATCATCTTTGGTGCT 1802
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGGGCCGGGTATCCGGGTCAAGCGGGTGGAGCTGCCATCGCCAATATCATCTTTGGTGCT 1739
Query 1803 GCTAATCCCGGAGGAAAACTACCAATGACATGGTATCCACAAGATTACGTGGCCAAAGTG 1862
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1740 GCTAATCCTGGAGGAAAGCTACCAATGACATGGTATCCACAAGATTATGTGGCAAAAGTG 1799
Query 1863 CCAATGACGGTAATGGCCATGAGAGCATCCGGTAATTATCCAGGAAGGACATACAGATTC 1922
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1800 CCAATGACGGTAATGGCTATGAGAGCATCCGGAAATTACCCAGGAAGGACATACAGATTT 1859
Query 1923 TACAAAGGTCCAGTAGTATTTCCATTTGGGTTCGGTTTAAGTTACACTACCTTCACTCAT 1982
|||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||
Sbjct 1860 TACAAAGGTCCAGTGGTGTTCCCATTTGGGTTCGGTTTAAGTTACACTACCTTCACTAAT 1919
Query 1983 AGTTTGGCCAAAAGCCCATTGGCCCAACTATCAGTTTCACTCTCCAATCTCAACTCTGCC 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 AGTTTGGCCAAAAGCCCATTGGCCCAACTATCAGTTTCACTCTCCAATCTCAACTCTGCC 1979
Query 2043 AATACCATTCTCAACTCTTCATCACACTCCATCAAAGTGTCTCACACCAACTGCAATTCA 2102
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 AATGCCATTCTCAACTCTACATCACACTCCATCAAAGTGTCTCACACCAACTGCAATTCG 2039
Query 2103 TTTCCGAAAATGCCCCTTCACGTCGAAGTATCAAACACAGGTGAATTCGATGGAACACAC 2162
||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||||
Sbjct 2040 TTTCCGAAAATGCCCCTCCACGTGGAAGTGTCGAACACCGGTGAATTCGACGGAACACAC 2099
Query 2163 ACGGTGTTTGTATTTGCTGAGCCGCCGATAAACGGAATAAAAGGATTGGGTGTGAACAAA 2222
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 2100 ACGGTGTTTGTCTTTGCCGAGCCGCCGAAAAACGGAATAAAAGGATTGGGTGTGAACAAA 2159
Query 2223 CAATTGATAGCGTTCGAGAAGGTTCATGTCATGGCAGGGGCAAAACAGACCGTTCAAGTT 2282
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2160 CAGTTGATAGCGTTTGAGAAGGTTCATGTCATGGCAGGGGCAAAACAGACCGTTCGAGTT 2219
Query 2283 GATGTTGATGCTTGCAAGCATCTTGGTGTAGTGGATGAGTATGGAAAGAGGAGAATCCCA 2342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 GATGTTGATGCTTGCAAGCATCTTGGTGTAGTGGATGAGTATGGAAAGAGGAGAATCCCG 2279
Query 2343 ATGGGTGAGCATAAGCTGCACATTGGTGACCTTAAACATACTATTTTGGTCCAACCGCAA 2402
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2280 ATGGGTGAACATAAGCTGCACATTGGTGACCTTAAACATACTATTTTGGTCCAACCACAA 2339
Query 2403 CTTTGACGGACGCATa-aaaaaaC 2425
|||||| ||| ||||| |||||||
Sbjct 2340 CTTTGAGGGAGGCATATAAAAAAC 2363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102158037090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5