BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49390.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357183 jgi|Araly1|357183|fgenesh1_pg.C_scaffold_8000970 1387 0.0
> Ahg357183 jgi|Araly1|357183|fgenesh1_pg.C_scaffold_8000970
Length=2298
Score = 1387 bits (751), Expect = 0.0
Identities = 1016/1139 (89%), Gaps = 37/1139 (3%)
Strand=Plus/Plus
Query 13 AGGTGTACTTCTTGCTCGAATTTTGTAGTTTATGCACGAAAG-A-GAAGAATGTATCAGT 70
||||| ||||||||| |||||||||||||||||||| | || | |||||| ||||| ||
Sbjct 1013 AGGTGCACTTCTTGCACGAATTTTGTAGTTTATGCA--AGAGCACGAAGAAGGTATCGGT 1070
Query 71 CTTGAGGGAACTTATCAGAG-TCGGTCTTTTTGACATCATTGCAGAAGTCTTGATGAGTT 129
|||||||||||||||||| | | |||||||||||||||||||||||| |||||| ||||
Sbjct 1071 CTTGAGGGAACTTATCAGTGAT-GGTCTTTTTGACATCATTGCAGAAATCTTGAAGAGTC 1129
Query 130 CAGATAAGAAACTCGTATTAATGGGGGCAAAAATCCTTAGTGTTTTGTTGGCTCAAGATT 189
|||||||||||||| ||||||||||||| |||| |||||| || |||||||||||||||
Sbjct 1130 CAGATAAGAAACTCATATTAATGGGGGCCGAAATTCTTAGTATTGTGTTGGCTCAAGATT 1189
Query 190 C-C--ATCCGCTTATGCTCTTATGTTGTTCGACCAGAAACTTACCTCCTTGGTCTCTTGG 246
| | || | |||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1190 CTCTTATGCTCTTATGCTCTTATGTTGTTCGACCGGAAACTCCCCTCCTTGGTCTCTTGG 1249
Query 247 TTAAGGGAATGATGGAAGATTTTGGTGATGAGATGGAATCGCTGTTTGTGGACATTATTC 306
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1250 TTAAGAGAATGATGGAAGATTTTGGTGATAAGATGGAATCGCTGTTTGTGGACATTATTC 1309
Query 307 AAAATGTATTGGGATGTGGTGGAGCTC---A-G-----GTCTCTGATAAGAAGACGAATA 357
|||||||||||| || | ||||||||| | | ||||||||||| ||| ||| |
Sbjct 1310 AAAATGTATTGGAATTTCGTGGAGCTCAAAATGTACAATTCTCTGATAAGCAGAAGAAGA 1369
Query 358 TGCAAAGGATCATTTGGGATATTTTCTGTGAGAAGCATCTACCTGAATTAGTTGATTTCA 417
||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1370 TGCAAGGGATGATTTTGGATACTTTCTGTGAGAAGCATCTACCTGAATTAGTTGATTTAA 1429
Query 418 TAATGGCCTCATGTCCTGAAAGACCTGGCGATACATCTGAAGGTGCATTCGTAAGAGTTG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TAATGGCCTCATGTCCTGAAAGACCTGGCGATACATCTGAAGGTGCATTCGTAAGAGTTG 1489
Query 478 GCAGCCATCGTGGAACAAAGCCGGGAA-TCCTATTGCGCATTTGTGAATTGCTGTGCTCT 536
||||||||||||| ||||||||| || ||||||||| ||||||| ||||||||||||||
Sbjct 1490 GCAGCCATCGTGGGGCAAAGCCGG-AAGTCCTATTGCACATTTGTCAATTGCTGTGCTCT 1548
Query 537 TGCGTTCAGCTGGATCCATCCAGGACAAATTTTCTCCATAACAGTGTGATAGAAAAGGTT 596
|||||||| |||||||||| ||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1549 TGCGTTCAACTGGATCCATTCAGGACAAATTTTCTCCATAACAATTTGACAGAAAAGGTT 1608
Query 597 TTGCTTCTCACTCGAAGAAAGGAAAAAACCCTAGTGGCTGCAGCTGTTCGATTTGTCCGC 656
|||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1609 TTGCTTCTTACACGAAGAAAGGAAAAACCCCTAGTGGCTGCGGCTGTTCGATTTGTCCGC 1668
Query 657 ACTCTCCTCTCTGTCCATAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTG 716
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ACTCTCCTCTCTGTCCATGATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTG 1728
Query 717 AAACCGATTATCGAAGTTTTTGTTGCTAATCGTCATCGGGACAACCTGATGACTGCTGCT 776
||||||||||| || |||||||||||| || |||| | ||||||||| ||||| |||||
Sbjct 1729 AAACCGATTATAGATGTTTTTGTTGCTGATGGTCACCAGGACAACCTCCTGACTTCTGCT 1788
Query 777 GTGTTGGAGCTTCTTGAGCACATACGCAAGGAATATGCAGTGTTGGTCAAATACGTAGGT 836
|| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1789 GTCTTGGAGCTTCTTGAGCACATACGCAAGAAAAATGCAGTGTTGGTCAAATACGTAGTT 1848
Query 837 GATACATTTTGGGACCAGCTAGCTCCATTTGAGAACCTGCGTTCCATCAAGGATTTGAAA 896
|||||||||||||||||| |||||||||||||| |||||| |||| || ||||||| |||
Sbjct 1849 GATACATTTTGGGACCAGTTAGCTCCATTTGAGCACCTGCCTTCCCTCCAGGATTTCAAA 1908
Query 897 ACGAAATATGAGAAG-G----GA----------CCAAAGAGCACCACTGATGATGAATCT 941
|| |||||||||||| | || ||||||||||||||||||||| |||||
Sbjct 1909 ACAAAATATGAGAAGTGCTTAGAAAGGAAGGGACCAAAGAGCACCACTGATGATCAATCT 1968
Query 942 GATATGAGACAAGATGGGCGTGCTCTGGATGaaaaaaaGCCAGCTTCTGCTTCCAGTACA 1001
||||||||||||||||||||||||||||||||| ||||| || ||||||||||| || ||
Sbjct 1969 GATATGAGACAAGATGGGCGTGCTCTGGATGAAGAAAAGTCACCTTCTGCTTCCTGT-CA 2027
Query 1002 -CAGATGGAAGAAGCTGATCCCCATAATTCCAATGCCACAGCTGCAAGTTCTGCTTCTAG 1060
||||||||||||||||| |||||||||||| ||| | |||||||||| ||| || ||||
Sbjct 2028 ACAGATGGAAGAAGCTGAGCCCCATAATTCCGATGTCGCAGCTGCAAGCTCTACTCCTAG 2087
Query 1061 CACACAGATGGAAGATGCTGAGCCCTATAATCCTGATGTCACAGCTGCAAGTTCTACTT 1119
|||||||||||||| | ||||||||||||||| |||||| |||||||||||||| |||
Sbjct 2088 TACACAGATGGAAGAAGATGAGCCCTATAATCCCGATGTCCCAGCTGCAAGTTCTGCTT 2146
Score = 385 bits (208), Expect = 7e-106
Identities = 263/289 (91%), Gaps = 6/289 (2%)
Strand=Plus/Plus
Query 1238 TTCTACTT-CTATCACACCGATGGAAGTAGCTGAGCCCTATAA-TCCTGATGTCACAGCT 1295
|||| ||| || ||| || |||||||| |||||||||| |||| ||| |||||| |||||
Sbjct 2013 TTCTGCTTCCTGTCA-ACAGATGGAAGAAGCTGAGCCCCATAATTCC-GATGTCGCAGCT 2070
Query 1296 GCAAGTTCTACTTCTA-TCACACCGATGGAAGTAGCTGAGCCCTATAATCCTGGTGTCAC 1354
||||| |||||| ||| | |||| |||||||| || ||||||||||||||| | |||| |
Sbjct 2071 GCAAGCTCTACTCCTAGT-ACACAGATGGAAGAAGATGAGCCCTATAATCCCGATGTCCC 2129
Query 1355 AGCTGCAAGTTCTGTTTCTCCGAGCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGA 1414
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2130 AGCTGCAAGTTCTGCTTCTCCGAGCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGA 2189
Query 1415 CGAAGATGAGCTAGAGAAGAGTAAAAGACAGAAGCTCAGTTCAACAAGTGAAGGAAATAA 1474
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2190 CGAAGATGAGCAAGAGAAGCGTAAAAGACAGAAGCTCAGTTCAACAAGTGAAGGAAACAA 2249
Query 1475 GAACACCCCAGAACAAGGTGGTGAAGCTAAGGAACCTGGAGAACTCTAA 1523
|||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2250 GAACTCCCCAGAACAAGGTGGCGAAGCTAAGGAACCTGGAGAACTCTAA 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5