BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49400.1
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494997 jgi|Araly1|494997|fgenesh2_kg.8__813__AT5G49400.1 1487 0.0
> Ahg494997 jgi|Araly1|494997|fgenesh2_kg.8__813__AT5G49400.1
Length=1109
Score = 1487 bits (805), Expect = 0.0
Identities = 1000/1091 (92%), Gaps = 26/1091 (2%)
Strand=Plus/Plus
Query 64 ATTCCAAGCACGCTCCTTCGATCTTCCTCTT-G-G-TACGCTCGTTTCTAATT-AAACAT 119
||||||||||||||||||||||||||||||| | | ||| ||||||||||||| |||||
Sbjct 28 ATTCCAAGCACGCTCCTTCGATCTTCCTCTTGGTGATACTCTCGTTTCTAATTGTAACAT 87
Query 120 GTCTAATTCAAAGGACGAGAAATCACAAGATGCAGCTGATAGAATCAAGGCTGCAACACT 179
|||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 88 GTCTAATTCAAAGGACGAGAAAGCACAAGTTGCAGCTGATAAAATCAAGGCTGCAACACT 147
Query 180 CACTGCTGCTAAAGGTCTAAGCCGTACACAAGCGGAGAGAGCAGCGGCTGCAGCAGCGAG 239
|||||||||||||||||| || ||||| ||||| ||| ||||||| |||||||| |||||
Sbjct 148 CACTGCTGCTAAAGGTCTGAGTCGTACTCAAGCTGAGCGAGCAGCAGCTGCAGCGGCGAG 207
Query 240 AAACGTTAACGCTTATGGCCAGAAA-GAAGAAGGTCCGAGTAGATGGCAGGAGAAAAGAG 298
|||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||
Sbjct 208 AAACGTTAACGCTTATGGGCA-AAAGGAAGAAGGTCCCAGTAGATGGCAGGAGAAAAGAG 266
Query 299 AATTAAAGAGGCAGATGTATTTGATGAGTACTGAGAAAGCTGTCAGGCTTGGTGAAAGGA 358
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 267 AATTAAAGAGGCAGATGTATTTGATGAGTACCGAGAAAGCGGTTAGGCTTGGTGAAAGGA 326
Query 359 AAGATAAAACAATGTCAGCTTCAGCCGTGGGAAGCAGTGCTTCGGCGGCTTCACAGTGTC 418
|||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| |
Sbjct 327 AAGACAAAACTATGTCAGCTTCTGCCGTGGGAAGCAGTGCTTCGGCTGCTTCACTGTGCC 386
Query 419 AGAAATGTTTCCAAGCTGGGCATTGGACTTATGAGTGTAAGAATGAAAGGGTTTATATCT 478
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AGAAATGTTTCCAAACTGGACATTGGACTTATGAGTGTAAGAATGAAAGGGTTTATATCT 446
Query 479 CGAGGCCTTCGAGAACTCAGCAGCTTAAGAATCCTAAACTGAGAACGAAGCCTTCTG-Tt 537
| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 447 CCAGGCCTTCGAGAACCCAGCAGCTTAAGAATCCTAAACTGAGAATGAAGCCTTC-GATT 505
Query 538 gatgatcttgatggtagtgatgatgatgatgaAGAAGAAAGGCCTGATGCAACTAATGGG 597
|||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 506 GATGATCTTGATGGTAATGATGATGATGATGATGAAGAAAAGCCAGATGCAACTAATGGG 565
Query 598 AAAGCAGAAGTTGAGAAGCGATCTAAGAAGAGTAAGCGAAAGCATAGGTCAAAGTCTGAT 657
||||| ||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 566 AAAGCGGAAGTGGAGAGGCGGTCTAAGAAGAGTAAGAGAAAGCATAGGTCAAAGTCTGAT 625
Query 658 TCTGAAAGTGATAGTGAAGCCTCTGTGTTTGAAACAGATAGTGATGGCTCATCTGGAGAG 717
|||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 626 TCTGGAAGTGACAGTGAAGCCTCTGTGTTTGAAACAGATAGTGACGGCTCATCTGGAGAG 685
Query 718 AGTAGTTCAGAATACAGTTCATCGTCGGACTCagaggacgaaaggaggaggagaagaaag 777
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 686 AGTAGTTCAGAATACAGTTCATCTTCGGACTCAGAGGACGAAAGGAGGAGGAAAAGAAAG 745
Query 778 gccaagaagagcaagaagaagcaaaagcagaggaaagaaaggcgaagaaggTACAGCTCT 837
|| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 746 GCGAAGAAGAGCAAGAAGAAACAAAAGCAGAGTAAAGAAAGGCGAAGAAGATACAGCTCT 805
Query 838 TCTTCATCGGAGTCATCTGAGTCAGAATCAGCTTCGGACTCAGATTCTGATgaagataga 897
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 806 TCTTCGTCGGAGTCATCTGAGTCAGAATCAGCTTCGGACTCAGATTCTGATGGAGATAGA 865
Query 898 agcagaagaaagaagaagagcaagaGGCACAGCAACAAGCGTCGTTGAATTGGTTTT-AG 956
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 866 AGCAGAAGAAAGAAGAAGAGCAAGAGGCACAGCAACAAACGTCGATGAATTGGTTTTCAG 925
Query 957 GAAATC-GATAAGTGGATGAAAATT-TTC-ATGCCTT---AGAAT----CATTTTAAGCT 1006
|||||| || ||||||||||||||| || ||||||| ||||| |||||| ||
Sbjct 926 GAAATCAGA-AAGTGGATGAAAATTCTTATATGCCTTTTTAGAATGAATCATTTTGTTCT 984
Query 1007 TCTTAAAGGAAACTCACTGCTATGTTACTTCTTTTTCTTCAAGTTCGAttttttcttttt 1066
| | ||| |||||||||||| | || |||||||||| ||||||||| ||||||| |||
Sbjct 985 ACATGAAGAAAACTCACTGCT-TCTTTCTTCTTTTTCCTCAAGTTCG-TTTTTTCGTTT- 1041
Query 1067 GTCAGCCATTTATGGCTTTATGTTGTAACAAACTGATAAATCTTTAGAATCTCCTCAAGT 1126
||||||||||||||||| | |||||||||||||||| |||||| |||||| ||||||||
Sbjct 1042 GTCAGCCATTTATGGCTGT--GTTGTAACAAACTGATGAATCTT-AGAATCCCCTCAAGT 1098
Query 1127 TTTCATAGCTC 1137
|||||||||||
Sbjct 1099 TTTCATAGCTC 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5