BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G49410.1

Length=975
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg357185 jgi|Araly1|357185|fgenesh1_pg.C_scaffold_8000972           660    0.0  


> Ahg357185 jgi|Araly1|357185|fgenesh1_pg.C_scaffold_8000972
Length=432

 Score =  660 bits (357),  Expect = 0.0
 Identities = 412/438 (94%), Gaps = 6/438 (1%)
 Strand=Plus/Plus

Query  288  ATGTTACGGAACATGATGATGCCTTGGAACAGTAGCGATCACAATGTAGTTGGAATGTTA  347
            ||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct  1    ATGTTGCGTAACATGATGATGCCTTGGAACAGAAGCAATCACAATGTAGTTGGAATGTTA  60

Query  348  ACAAGGCATTTCGCCACAAAACCAAAACCCAAGATGAAACCGATTGAGCTGAACACACCA  407
            ||||||||||| ||||| ||||| ||||||||||||||||| || ||| |||||||||||
Sbjct  61   ACAAGGCATTTTGCCACGAAACCGAAACCCAAGATGAAACCAATCGAGTTGAACACACCA  120

Query  408  CCGGAGCAAACTCAGACGATAACCCGAGTGATCTTTGATATTTTGAAGGATCATGGACCT  467
            ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  121  CCGGAGCAAACACAGACGATCACTCGAGTGATCTTTGATATTTTGAAGGATCATGGACCT  180

Query  468  CTAACCATTGCTGAAACTTGGGATCGTGTCAAGGAAGTGGGATTAAGAGGGCTGACGAGC  527
            || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  181  CTTACCATTGCTGAAACTTGGGATCGTGTCAAGGAAGTGGGATTAAGAGGGCTAACGAGC  240

Query  528  AAGCGTCACATGAAGATAATACTAAGGTGGATGAGAGAGAGACAGAAGCTGAAGCTGATA  587
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  AAGCGTCACATGAAGATTATACTAAGATGGATGAGAGAGAGACAGAAGCTGAAGCTGATA  300

Query  588  TGTAACCATGTTGGTCCTCACAAGCAATTCTTGTACACTACTTGGTTCACTAAACACAAC  647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TGTAACCATGTTGGTCCTCACAAGCAATTCTTGTACACTACTTGGTTCACTAAACACAAC  360

Query  648  CCTTCTTCTAAATTCCCCAAGTTACCACCGGAAAATCTCACAGGAAAATCCTCTGGCCAC  707
            ||||||||||||||||| ||||  | |||||||||||||||||||||||||||| |||||
Sbjct  361  CCTTCTTCTAAATTCCCTAAGT--C-ACCGGAAAATCTCACAGGAAAATCCTCTAGCCAC  417

Query  708  CCTCCTAAACTTCCCTGA  725
            |||   ||||| ||||||
Sbjct  418  CCT---AAACTGCCCTGA  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36216771150


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5